Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
17238	8142120	NM_005746	NAMPT		nicotinamide phosphoribosyltransferase

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8142120	7933084	NM_005746	NAMPT		0.995508	2.803101e-107	4.856933e-103	4.856933e-103
2	8142120	8046003	NM_012198	GCA		0.916865	7.140042e-43	1.237155e-38	6.185775e-39
3	8142120	8008870	NM_030938	TMEM49		0.909950	3.657424e-41	6.337219e-37	2.112406e-37
4	8142120	8099449	NM_033535	FBXL5		0.906275	2.608975e-40	4.520571e-36	1.130143e-36
5	8142120	8054329	NM_173647	RNF149		0.904471	6.645171e-40	1.151409e-35	2.302818e-36
6	8142120	8019885	NM_015295	SMCHD1		0.900721	4.378911e-39	7.587339e-35	1.264557e-35
7	8142120	8146550	NM_005625	SDCBP		0.898873	1.078735e-38	1.869124e-34	2.670177e-35
8	8142120	7950838	NM_007166	PICALM		0.898611	1.224378e-38	2.121480e-34	2.651850e-35
9	8142120	8083494	NM_007288	MME		0.898520	1.279076e-38	2.216254e-34	2.462505e-35
10	8142120	8113358	NM_005668	ST8SIA4		0.895707	4.859988e-38	8.420901e-34	8.420901e-35
11	8142120	8047161	NM_001031716	OBFC2A		0.895669	4.946853e-38	8.571413e-34	7.792193e-35
12	8142120	7933877	NM_004241	JMJD1C		0.891984	2.684988e-37	4.652280e-33	3.876900e-34
13	8142120	8058182	NM_173822	FAM126B		0.891292	3.663780e-37	6.348232e-33	4.883256e-34
14	8142120	8120943	NM_016230	CYB5R4		0.888017	1.551008e-36	2.687431e-32	1.919594e-33
15	8142120	7978932	NM_006939	SOS2		0.887988	1.570618e-36	2.721409e-32	1.814273e-33
16	8142120	8106602	NM_014733	ZFYVE16		0.886171	3.429393e-36	5.942110e-32	3.713819e-33
17	8142120	8146544	NM_001077619	UBXN2B		0.884857	5.984852e-36	1.036995e-31	6.099973e-33
18	8142120	8047381	NM_003879	CFLAR		0.883756	9.491498e-36	1.644592e-31	9.136621e-33
19	8142120	8152976	NM_144649	TMEM71		0.883610	1.008559e-35	1.747530e-31	9.197525e-33
20	8142120	8103951	NM_001995	ACSL1		0.883528	1.043617e-35	1.808275e-31	9.041375e-33
21	8142120	7902822	NM_006256	PKN2		0.882005	1.957402e-35	3.391590e-31	1.615043e-32
22	8142120	7983910	NM_020980	AQP9		0.881109	2.823447e-35	4.892186e-31	2.223721e-32
23	8142120	8052654	NM_020651	PELI1		0.880529	3.572765e-35	6.190530e-31	2.691535e-32
24	8142120	8004867	NM_001025579	NDEL1		0.880485	3.636780e-35	6.301448e-31	2.625604e-32
25	8142120	7954436	NM_006152	LRMP		0.878770	7.239993e-35	1.254474e-30	5.017894e-32
26	8142120	8016745	NM_001130528	SPAG9		0.878689	7.479352e-35	1.295947e-30	4.984413e-32
27	8142120	8079153	NM_016006	ABHD5		0.877299	1.296527e-34	2.246492e-30	8.320342e-32
28	8142120	7954810	NM_198578	LRRK2		0.876226	1.973698e-34	3.419826e-30	1.221366e-31
29	8142120	8101648	NM_016245	HSD17B11		0.876225	1.974246e-34	3.420776e-30	1.179578e-31
30	8142120	8045514	NM_001001664	SPOPL		0.876145	2.036533e-34	3.528700e-30	1.176233e-31
31	8142120	8111698	NM_152756	RICTOR		0.875722	2.400922e-34	4.160077e-30	1.341960e-31
32	8142120	7989037	NM_004748	CCPG1		0.874157	4.388773e-34	7.604428e-30	2.376384e-31
33	8142120	8019877	NM_015295	SMCHD1		0.873937	4.773603e-34	8.271222e-30	2.506431e-31
34	8142120	8174779	NM_013995	LAMP2		0.873746	5.134731e-34	8.896949e-30	2.616750e-31
35	8142120	7906377	NM_002432	MNDA		0.873587	5.455667e-34	9.453034e-30	2.700867e-31
36	8142120	8006123	NM_001304	CPD		0.873137	6.474882e-34	1.121903e-29	3.116397e-31
37	8142120	8099410	NM_148894	BOD1L		0.872685	7.684161e-34	1.331435e-29	3.598472e-31
38	8142120	7978595	NM_013448	BAZ1A		0.872631	7.842878e-34	1.358935e-29	3.576146e-31
39	8142120	7924603	NM_002296	LBR		0.872592	7.957731e-34	1.378836e-29	3.535477e-31
40	8142120	7919751	NM_021960	MCL1		0.870788	1.565081e-33	2.711816e-29	6.779541e-31
41	8142120	8119529	NM_015255	UBR2		0.870691	1.622572e-33	2.811431e-29	6.857149e-31
42	8142120	7957759	NM_181861	APAF1		0.868280	3.943009e-33	6.832052e-29	1.626679e-30
43	8142120	8099834	NM_003263	TLR1		0.868079	4.242890e-33	7.351656e-29	1.709687e-30
44	8142120	8157524	NR_024168	TLR4		0.867516	5.203864e-33	9.016736e-29	2.049258e-30
45	8142120	8135514	NM_001550	IFRD1		0.867033	6.198367e-33	1.073991e-28	2.386647e-30
46	8142120	7956670	NM_006313	USP15		0.865198	1.195856e-32	2.072059e-28	4.504477e-30
47	8142120	8093961	NM_014743	KIAA0232		0.864425	1.573014e-32	2.725562e-28	5.799068e-30
48	8142120	8068266	NM_000629	IFNAR1		0.864261	1.666625e-32	2.887761e-28	6.016169e-30
49	8142120	8152133	NM_015713	RRM2B		0.864020	1.814021e-32	3.143155e-28	6.414601e-30
50	8142120	8152845	BC017297	FAM49B		0.863005	2.590630e-32	4.488785e-28	8.977570e-30

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.