[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 4714.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4714	8178699	NM_005510	DOM3Z		dom-3 homolog Z (C. elegans)

Fetching correlation data, please wait...
Getting list of correlations for id 4714.
Getting list of p-values for id 4714.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178699	8125220	NM_005510	DOM3Z	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8178699	8179926	NM_005510	DOM3Z	0.885553	4.461027e-36	7.729621e-32	3.864810e-32
3	8178699	8047736			0.700332	9.213971e-17	1.596505e-12	5.321682e-13
4	8178699	8035465	NM_016368	ISYNA1	0.697962	1.290840e-16	2.236639e-12	5.591597e-13
5	8178699	7945498	NM_021920	SCT	0.688112	5.063419e-16	8.773386e-12	1.754677e-12
6	8178699	8159616	NM_001144026	NDOR1	0.664152	1.134702e-14	1.966098e-10	3.276830e-11
7	8178699	8101507	NM_006168	NKX6-1	0.662820	1.337657e-14	2.317758e-10	3.311083e-11
8	8178699	7951703	NM_000795	DRD2	0.661894	1.498977e-14	2.597277e-10	3.246597e-11
9	8178699	7992552	NM_022372	MLST8	0.658780	2.192297e-14	3.798594e-10	4.220659e-11
10	8178699	7904879	ENST00000364272		0.657965	2.419869e-14	4.192907e-10	4.192907e-11
11	8178699	8155490	NR_003670	KGFLP2	0.654621	3.616946e-14	6.267082e-10	5.697347e-11
12	8178699	8082254	NR_024251	LOC100125556	0.650812	5.682247e-14	9.845629e-10	8.204691e-11
13	8178699	7960117	NM_018663	PXMP2	0.649588	6.561159e-14	1.136852e-9	8.745015e-11
14	8178699	8011188	ENST00000330676		0.645293	1.081168e-13	1.873339e-9	1.338099e-10
15	8178699	8153625	NM_017570	OPLAH	0.644279	1.215108e-13	2.105418e-9	1.403612e-10
16	8178699	8158554	NM_016307	PRRX2	0.643379	1.347339e-13	2.334534e-9	1.459084e-10
17	8178699	8005833	NR_003064	PYY2	0.642732	1.450930e-13	2.514026e-9	1.478839e-10
18	8178699	7960088	NM_001142641	FBRSL1	0.637871	2.516402e-13	4.360170e-9	2.422316e-10
19	8178699	8170921	NM_017514	PLXNA3	0.635030	3.455921e-13	5.988074e-9	3.151618e-10
20	8178699	8169519	NM_019045	WDR44	-0.633331	4.171669e-13	7.228252e-9	3.614126e-10
21	8178699	8050497	NM_145260	OSR1	0.628783	6.864806e-13	1.189465e-8	5.664119e-10
22	8178699	7935855	NM_006562	LBX1	0.628110	7.385415e-13	1.279671e-8	5.816686e-10
23	8178699	7963265	NR_026893	POU6F1	0.627917	7.540960e-13	1.306622e-8	5.680966e-10
24	8178699	8068551	NM_101395	DYRK1A	-0.626413	8.871603e-13	1.537183e-8	6.404928e-10
25	8178699	8054766	NM_001097	ACR	0.626097	9.177873e-13	1.590250e-8	6.361000e-10
26	8178699	8133477	NM_016328	GTF2IRD1	0.625863	9.412312e-13	1.630871e-8	6.272582e-10
27	8178699	8165021	ENST00000428385		0.625825	9.450248e-13	1.637445e-8	6.064609e-10
28	8178699	8003850	NM_144611	CYB5D2	0.617627	2.252118e-12	3.902244e-8	1.393659e-9
29	8178699	7995834	NR_003669	MT1IP	0.617593	2.260259e-12	3.916350e-8	1.350466e-9
30	8178699	7905020	NM_000798	DRD5	0.613509	3.450890e-12	5.979357e-8	1.993119e-9
31	8178699	7929947	NM_005521	TLX1	0.613116	3.593199e-12	6.225935e-8	2.008366e-9
32	8178699	8092468	NM_033259	CAMK2N2	0.611732	4.140867e-12	7.174880e-8	2.242150e-9
33	8178699	7912743	NM_030907	C1orf89	0.610853	4.529683e-12	7.848582e-8	2.378358e-9
34	8178699	7994981	NM_152288	ORAI3	0.610751	4.576862e-12	7.930329e-8	2.332450e-9
35	8178699	8075130	NM_012399	PITPNB	-0.609125	5.399054e-12	9.354941e-8	2.672840e-9
36	8178699	7903988	NM_001010935	RAP1A	-0.608304	5.866618e-12	1.016509e-7	2.823636e-9
37	8178699	8152477	NM_006265	RAD21	-0.608009	6.044279e-12	1.047292e-7	2.830520e-9
38	8178699	8028872	NM_001042544	LTBP4	0.607238	6.532439e-12	1.131876e-7	2.978620e-9
39	8178699	7971039	NM_001014286	FAM48A	-0.607175	6.574222e-12	1.139115e-7	2.920809e-9
40	8178699	8055476	NR_024058	YWHAE	-0.606070	7.345599e-12	1.272772e-7	3.181930e-9
41	8178699	8098571	BC140795	HELT	0.605652	7.659633e-12	1.327185e-7	3.237036e-9
42	8178699	8091141	NM_019001	XRN1	-0.604579	8.526943e-12	1.477463e-7	3.517770e-9
43	8178699	7985166	NM_004136	IREB2	-0.604237	8.821844e-12	1.528561e-7	3.554793e-9
44	8178699	8109981	NM_003862	FGF18	0.603621	9.380056e-12	1.625282e-7	3.693824e-9
45	8178699	8103011	NM_199324	OTUD4	-0.602526	1.045573e-11	1.811664e-7	4.025920e-9
46	8178699	8110685	NR_024158	LOC25845	0.602393	1.059499e-11	1.835795e-7	3.990858e-9
47	8178699	8104314	NM_024337	IRX1	0.601765	1.127344e-11	1.953348e-7	4.156060e-9
48	8178699	7920707	NM_006589	FAM189B	0.601740	1.130160e-11	1.958228e-7	4.079641e-9
49	8178699	8162179	NM_002048	GAS1	0.601381	1.170890e-11	2.028801e-7	4.140410e-9
50	8178699	7961865	NM_033360	KRAS	-0.601124	1.200867e-11	2.080743e-7	4.161486e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation