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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 4821.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
4821 8144424 NM_018088 FAM90A1 link to infopage family with sequence similarity 90, member A1

Fetching correlation data, please wait...
Getting list of correlations for id 4821.
Getting list of p-values for id 4821.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8144424 8144440 NM_018088 FAM90A1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8144424 8144428 NM_018088 FAM90A1 link to infopage 0.956616 5.601304e-57 9.705379e-53 4.852690e-53
3 8144424 8144432 NM_018088 FAM90A1 link to infopage 0.956616 5.601304e-57 9.705379e-53 3.235126e-53
4 8144424 8144436 NM_018088 FAM90A1 link to infopage 0.956616 5.601304e-57 9.705379e-53 2.426345e-53
5 8144424 8144444 NM_018088 FAM90A1 link to infopage 0.956616 5.601304e-57 9.705379e-53 1.941076e-53
6 8144424 8149204 NM_018088 FAM90A1 link to infopage 0.955245 2.686685e-56 4.655220e-52 7.758700e-53
7 8144424 8144448 NM_018088 FAM90A1 link to infopage 0.930928 7.346411e-47 1.272913e-42 1.818447e-43
8 8144424 8144388 NM_018088 FAM90A1 link to infopage 0.889730 7.331981e-37 1.270412e-32 1.588016e-33
9 8144424 8149361 NM_018088 FAM90A1 link to infopage 0.859354 9.110462e-32 1.578570e-27 1.753966e-28
10 8144424 8149383 NM_018088 FAM90A1 link to infopage 0.844511 1.075615e-29 1.863719e-25 1.863719e-26
11 8144424 8024995 NM_004558 NRTN link to infopage 0.791717 8.860842e-24 1.535318e-19 1.395744e-20
12 8144424 8075365 NM_001017981 RNF215 link to infopage 0.780177 1.035693e-22 1.794545e-18 1.495454e-19
13 8144424 7966631 NM_022363 LHX5 link to infopage 0.779795 1.120815e-22 1.942037e-18 1.493874e-19
14 8144424 7987574 NM_133639 RHOV link to infopage 0.778760 1.386701e-22 2.402736e-18 1.716240e-19
15 8144424 7996430 NM_001040667 HSF4 link to infopage 0.770092 7.888012e-22 1.366756e-17 9.111706e-19
16 8144424 8151149 NM_006421 ARFGEF1 link to infopage -0.767289 1.361697e-21 2.359413e-17 1.474633e-18
17 8144424 8166956 NM_021140 KDM6A link to infopage -0.766979 1.445715e-21 2.504991e-17 1.473524e-18
18 8144424 8085815 NM_001068 TOP2B link to infopage -0.764913 2.150458e-21 3.726099e-17 2.070055e-18
19 8144424 8003810 ENST00000322899 link to infopage 0.758951 6.610687e-21 1.145434e-16 6.028599e-18
20 8144424 8083429 NM_021038 MBNL1 link to infopage -0.756774 9.883032e-21 1.712433e-16 8.562164e-18
21 8144424 8079021 NM_001904 CTNNB1 link to infopage -0.754652 1.456489e-20 2.523659e-16 1.201742e-17
22 8144424 7971197 NM_172373 ELF1 link to infopage -0.752712 2.069216e-20 3.585331e-16 1.629696e-17
23 8144424 7923621 NM_002256 KISS1 link to infopage 0.752668 2.085737e-20 3.613957e-16 1.571286e-17
24 8144424 7998679 NM_178167 ZNF598 link to infopage 0.752001 2.351409e-20 4.074286e-16 1.697619e-17
25 8144424 8048146 NM_021141 XRCC5 link to infopage -0.751382 2.627261e-20 4.552256e-16 1.820902e-17
26 8144424 7955019 NM_152641 ARID2 link to infopage -0.750743 2.945273e-20 5.103275e-16 1.962798e-17
27 8144424 7945688 NR_003512 INS-IGF2 link to infopage 0.750614 3.014002e-20 5.222360e-16 1.934208e-17
28 8144424 8044263 NM_006267 RANBP2 link to infopage -0.750443 3.107186e-20 5.383820e-16 1.922793e-17
29 8144424 7938208 NM_014469 RBMXL2 link to infopage 0.749125 3.926784e-20 6.803939e-16 2.346186e-17
30 8144424 8123891 ENST00000410451 link to infopage 0.748936 4.060478e-20 7.035591e-16 2.345197e-17
31 8144424 7961767 AK295862 KIAA0528 link to infopage -0.748592 4.315285e-20 7.477094e-16 2.411966e-17
32 8144424 8138670 NM_031243 HNRNPA2B1 link to infopage -0.748342 4.509963e-20 7.814413e-16 2.442004e-17
33 8144424 8043283 NM_018433 KDM3A link to infopage -0.746668 6.053633e-20 1.048913e-15 3.178524e-17
34 8144424 8104944 NM_015384 NIPBL link to infopage -0.746471 6.266114e-20 1.085730e-15 3.193322e-17
35 8144424 7991332 NM_018670 MESP1 link to infopage 0.745692 7.178084e-20 1.243747e-15 3.553562e-17
36 8144424 8012344 NM_032580 HES7 link to infopage 0.745688 7.183109e-20 1.244617e-15 3.457270e-17
37 8144424 8120441 NM_015153 PHF3 link to infopage -0.745000 8.097721e-20 1.403092e-15 3.792141e-17
38 8144424 8026735 NM_133644 GTPBP3 link to infopage 0.744761 8.440589e-20 1.462501e-15 3.848686e-17
39 8144424 8159554 NM_207309 UAP1L1 link to infopage 0.744180 9.334767e-20 1.617435e-15 4.147269e-17
40 8144424 7930454 NM_145341 PDCD4 link to infopage -0.742813 1.181740e-19 2.047601e-15 5.119002e-17
41 8144424 7945445 BC039077 C11orf35 link to infopage 0.742305 1.289431e-19 2.234198e-15 5.449263e-17
42 8144424 8100902 NM_032217 ANKRD17 link to infopage -0.741855 1.392976e-19 2.413610e-15 5.746689e-17
43 8144424 8042270 NM_001001521 UGP2 link to infopage -0.741193 1.559734e-19 2.702551e-15 6.285003e-17
44 8144424 7947928 NM_031909 C1QTNF4 link to infopage 0.740997 1.612780e-19 2.794464e-15 6.351055e-17
45 8144424 7914791 NM_005066 SFPQ link to infopage -0.740964 1.622027e-19 2.810486e-15 6.245525e-17
46 8144424 7898377 NM_014675 CROCC link to infopage 0.740716 1.692173e-19 2.932028e-15 6.373974e-17
47 8144424 7934544 NM_144589 COMTD1 link to infopage 0.740689 1.699977e-19 2.945550e-15 6.267128e-17
48 8144424 7901309 NM_012186 FOXE3 link to infopage 0.740633 1.716123e-19 2.973526e-15 6.194846e-17
49 8144424 8093826 NM_000683 ADRA2C link to infopage 0.739509 2.077116e-19 3.599018e-15 7.344935e-17
50 8144424 8064370 NM_004609 TCF15 link to infopage 0.739498 2.080960e-19 3.605680e-15 7.211360e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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