Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5	hsa-let-7c	MI0000064			Homo sapiens let-7c stem-loop

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	hsa-let-7c	hsa-let-7b	MI0000063			0.846670	5.545208e-30	9.608182e-26	9.608182e-26
2	hsa-let-7c	hsa-miR-192	MI0000234			-0.692516	2.766826e-16	4.794080e-12	2.397040e-12
3	hsa-let-7c	hsa-miR-194				-0.688555	4.766740e-16	8.259330e-12	2.753110e-12
4	hsa-let-7c	hsa-miR-877	MI0005561			0.667370	7.598837e-15	1.316650e-10	3.291626e-11
5	hsa-let-7c	hsa-miR-361-5p				-0.665064	1.013306e-14	1.755755e-10	3.511511e-11
6	hsa-let-7c	hsa-miR-215	MI0000291			-0.629995	6.016534e-13	1.042485e-8	1.737475e-9
7	hsa-let-7c	hsa-miR-23a	MI0000079			-0.623268	1.242405e-12	2.152715e-8	3.075307e-9
8	hsa-let-7c	hsa-miR-610	MI0003623			0.613080	3.606477e-12	6.248943e-8	7.811178e-9
9	hsa-let-7c	hsa-miR-330-3p				-0.603637	9.365339e-12	1.622732e-7	1.803036e-8
10	hsa-let-7c	hsa-miR-192-3p				-0.583814	6.289353e-11	1.089756e-6	1.089756e-7
11	hsa-let-7c	hsa-miR-148b-5p				-0.582573	7.055684e-11	1.222538e-6	1.111399e-7
12	hsa-let-7c	hsa-miR-26b-3p				-0.581294	7.939207e-11	1.375626e-6	1.146355e-7
13	hsa-let-7c	hsa-miR-340-3p				-0.573160	1.661791e-10	2.879385e-6	2.214911e-7
14	hsa-let-7c	hsa-miR-502-5p				-0.563879	3.767319e-10	6.527634e-6	4.662596e-7
15	hsa-let-7c	hsa-miR-331-3p				-0.558219	6.130198e-10	1.062179e-5	7.081196e-7
16	hsa-let-7c	hsa-miR-30c				-0.551624	1.068867e-9	1.852026e-5	1.157517e-6
17	hsa-let-7c	hsa-miR-190b	MI0005545			0.550646	1.159512e-9	2.009086e-5	1.181815e-6
18	hsa-let-7c	hsa-miR-581	MI0003588			-0.542178	2.321208e-9	4.021957e-5	2.234421e-6
19	hsa-let-7c	hsa-miR-9-3p				-0.534550	4.267444e-9	7.394199e-5	3.891684e-6
20	hsa-let-7c	hsa-miR-744-3p				-0.526993	7.687429e-9	1.332001e-4	6.660004e-6
21	hsa-let-7c	hsa-miR-199b-5p				-0.523882	9.754472e-9	1.690157e-4	8.048369e-6
22	hsa-let-7c	hsa-miR-181a-3p				-0.523116	1.033941e-8	1.791510e-4	8.143226e-6
23	hsa-let-7c	hsa-miR-320				0.507769	3.225191e-8	5.588288e-4	2.429690e-5
24	hsa-let-7c	hsa-miR-630	MI0003644			0.507440	3.302706e-8	5.722598e-4	2.384416e-5
25	hsa-let-7c	hsa-miR-422a	MI0001444			0.506691	3.486158e-8	6.040466e-4	2.416187e-5
26	hsa-let-7c	hsa-let-7g	MI0000433			0.502130	4.830956e-8	8.370597e-4	3.219460e-5
27	hsa-let-7c	hsa-miR-33a-3p				-0.496470	7.195197e-8	1.246712e-3	4.617451e-5
28	hsa-let-7c	hsa-miR-30d	MI0000255			-0.494734	8.118533e-8	1.406698e-3	5.023922e-5
29	hsa-let-7c	hsa-miR-584	MI0003591			0.486470	1.429341e-7	2.476619e-3	8.540067e-5
30	hsa-let-7c	8133106	NR_002961	SNORA22		-0.483705	1.721495e-7	2.982834e-3	9.942779e-5
31	hsa-let-7c	hsa-miR-520d-5p				0.480235	2.168908e-7	3.758066e-3	1.212279e-4
32	hsa-let-7c	7960052	NR_002979	SNORA49		-0.476105	2.846132e-7	4.931493e-3	1.541092e-4
33	hsa-let-7c	7908777	ENST00000412093			-0.475336	2.992565e-7	5.185218e-3	1.571278e-4
34	hsa-let-7c	hsa-miR-616	MI0003629			0.474686	3.121964e-7	5.409428e-3	1.591008e-4
35	hsa-let-7c	hsa-miR-30e-3p				-0.474381	3.184647e-7	5.518037e-3	1.576582e-4
36	hsa-let-7c	hsa-miR-28-5p				-0.473166	3.445834e-7	5.970597e-3	1.658499e-4
37	hsa-let-7c	8109821	NM_006013	RPL10		-0.470005	4.224102e-7	7.319102e-3	1.978136e-4
38	hsa-let-7c	hsa-miR-30a	MI0000088			-0.464520	5.985651e-7	1.037134e-2	2.729299e-4
39	hsa-let-7c	hsa-miR-199a-5p				-0.464092	6.149129e-7	1.065460e-2	2.731947e-4
40	hsa-let-7c	hsa-miR-589-3p				-0.461159	7.388811e-7	1.280259e-2	3.200648e-4
41	hsa-let-7c	8043276	NR_004378	SNORD94		-0.459944	7.969381e-7	1.380855e-2	3.367938e-4
42	hsa-let-7c	hsa-miR-15b	MI0000438			-0.457090	9.506492e-7	1.647190e-2	3.921881e-4
43	hsa-let-7c	hsa-miR-590-5p				0.455534	1.045907e-6	1.812242e-2	4.214517e-4
44	hsa-let-7c	8124521	NM_003541	HIST1H4K		-0.454584	1.108509e-6	1.920713e-2	4.365256e-4
45	hsa-let-7c	hsa-miR-142-5p				0.451306	1.352658e-6	2.343751e-2	5.208335e-4
46	hsa-let-7c	8112312	NM_014473	DIMT1L		-0.450852	1.390200e-6	2.408799e-2	5.236519e-4
47	hsa-let-7c	8027258	AK298173	ZNF90		-0.449429	1.514523e-6	2.624214e-2	5.583434e-4
48	hsa-let-7c	hsa-miR-345	MI0000825			-0.449193	1.536133e-6	2.661658e-2	5.545120e-4
49	hsa-let-7c	7946812	NM_001017	RPS13		-0.448872	1.566032e-6	2.713463e-2	5.537680e-4
50	hsa-let-7c	8120215	NM_133367	PAQR8		-0.446864	1.765658e-6	3.059356e-2	6.118711e-4

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.