[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 5502.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5502	8045148	ENST00000427024

Fetching correlation data, please wait...
Getting list of correlations for id 5502.
Getting list of p-values for id 5502.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.058 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8045148	8055284	ENST00000427024		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8045148	7950762			0.380501	6.228314e-5	1.079180e+0	5.395900e-1
3	8045148	7920567	NM_006556	PMVK	0.380278	6.295346e-5	1.090795e+0	3.635982e-1
4	8045148	7933976	ENST00000411182		0.373891	8.534884e-5	1.478839e+0	3.697098e-1
5	8045148	7986001	ENST00000338706		0.370847	9.845066e-5	1.705855e+0	3.411709e-1
6	8045148	7942592	NR_000005	SNORD15A	0.367532	1.148358e-4	1.989760e+0	3.316266e-1
7	8045148	8017702	ENST00000410341		0.361214	1.532880e-4	2.656021e+0	3.794315e-1
8	8045148	7992841			0.356087	1.929252e-4	3.342814e+0	4.178518e-1
9	8045148	8013915			0.355161	2.010257e-4	3.483172e+0	3.870192e-1
10	8045148	8158513	NM_020438	DOLPP1	-0.353659	2.148422e-4	3.722571e+0	3.722571e-1
11	8045148	8080619	ENST00000363368		0.349129	2.619896e-4	4.539495e+0	4.126813e-1
12	8045148	8001348	GENSCAN00000033399		0.341836	3.583666e-4	6.209417e+0	5.174514e-1
13	8045148	8117237	ENST00000405676		0.341183	3.684161e-4	6.383545e+0	4.910419e-1
14	8045148	8003771	ENST00000410853		0.338740	4.083878e-4	7.076135e+0	5.054382e-1
15	8045148	8048116	ENST00000384544		0.338159	4.184764e-4	7.250940e+0	4.833960e-1
16	8045148	8101723	NM_153757	NAP1L5	0.338051	4.203653e-4	7.283669e+0	4.552293e-1
17	8045148	8030362	NR_000020	SNORD33	-0.337410	4.317951e-4	7.481713e+0	4.401008e-1
18	8045148	8010285	ENST00000363193		0.336486	4.487776e-4	7.775970e+0	4.319983e-1
19	8045148	7969772			0.335783	4.621028e-4	8.006856e+0	4.214135e-1
20	8045148	8074057	ENST00000410861		0.335016	4.770587e-4	8.265996e+0	4.132998e-1
21	8045148	8108483	NM_031467	SLC4A9	0.333763	5.024533e-4	8.706008e+0	4.145718e-1
22	8045148	8073573	NM_001002034	FAM109B	0.331918	5.421156e-4	9.393237e+0	4.269653e-1
23	8045148	7995348			0.330734	5.690503e-4	9.859934e+0	4.286928e-1
24	8045148	8154620	ENST00000365319		0.330073	5.846172e-4	1.012966e+1	4.220693e-1
25	8045148	8163015	ENST00000411190		0.328694	6.183548e-4	1.071423e+1	4.285693e-1
26	8045148	7976069	ENST00000410904		0.326586	6.733926e-4	1.166787e+1	4.487644e-1
27	8045148	8081878			-0.326558	6.741557e-4	1.168110e+1	4.326332e-1
28	8045148	8054769	AY427952	PS1TP4	0.326348	6.798905e-4	1.178046e+1	4.207308e-1
29	8045148	7991143	NM_014300	SEC11A	0.326348	6.798998e-4	1.178062e+1	4.062284e-1
30	8045148	8042062	ENST00000384237		-0.325160	7.131440e-4	1.235665e+1	4.118882e-1
31	8045148	8151411	ENST00000411016		0.325158	7.132037e-4	1.235768e+1	3.986349e-1
32	8045148	8123362	BX647686	CCR6	0.324854	7.219605e-4	1.250941e+1	3.909191e-1
33	8045148	8086417	ENST00000410254		0.322243	8.012142e-4	1.388264e+1	4.206860e-1
34	8045148	7982504	NM_152595	PGBD4	0.322039	8.077435e-4	1.399577e+1	4.116404e-1
35	8045148	7942174	NM_003626	PPFIA1	0.321835	8.143107e-4	1.410956e+1	4.031303e-1
36	8045148	7900488	hsa-mir-30e		0.321763	8.166355e-4	1.414984e+1	3.930512e-1
37	8045148	8085606	ENST00000410311		0.321755	8.168868e-4	1.415420e+1	3.825459e-1
38	8045148	8041223	ENST00000364801		0.321150	8.366915e-4	1.449735e+1	3.815093e-1
39	8045148	7986327			0.320834	8.472119e-4	1.467964e+1	3.764011e-1
40	8045148	8133110	ENST00000363800		0.320650	8.533987e-4	1.478684e+1	3.696710e-1
41	8045148	7996256	ENST00000410786		0.319810	8.821708e-4	1.528537e+1	3.728140e-1
42	8045148	8131811			0.319662	8.872954e-4	1.537417e+1	3.660516e-1
43	8045148	8055309			-0.319319	8.993819e-4	1.558359e+1	3.624091e-1
44	8045148	8032212	AK127759	NDUFS7	0.319301	8.999993e-4	1.559429e+1	3.544156e-1
45	8045148	7930559	AK027209		0.319117	9.065505e-4	1.570780e+1	3.490622e-1
46	8045148	7995330			0.318950	9.125164e-4	1.581117e+1	3.437211e-1
47	8045148	8157101	AK130032		0.316872	9.898106e-4	1.715045e+1	3.649031e-1
48	8045148	8164398	NM_004486	GOLGA2	0.316712	9.960082e-4	1.725783e+1	3.595382e-1
49	8045148	7975455			0.315772	1.033118e-3	1.790084e+1	3.653232e-1
50	8045148	8074642			0.315077	1.061364e-3	1.839026e+1	3.678051e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation