Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
57	hsa-miR-146b-3p

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	hsa-miR-146b-3p	hsa-miR-671-3p				0.740577	1.732606e-19	3.002086e-15	3.002086e-15
2	hsa-miR-146b-3p	hsa-miR-590-5p				-0.695235	1.894733e-16	3.283004e-12	1.641502e-12
3	hsa-miR-146b-3p	hsa-miR-92a				0.675832	2.584329e-15	4.477867e-11	1.492622e-11
4	hsa-miR-146b-3p	hsa-miR-28-3p				0.652051	4.909191e-14	8.506156e-10	2.126539e-10
5	hsa-miR-146b-3p	hsa-miR-140-5p				-0.647229	8.641398e-14	1.497295e-9	2.994590e-10
6	hsa-miR-146b-3p	hsa-miR-17	MI0000071			-0.647098	8.773231e-14	1.520138e-9	2.533563e-10
7	hsa-miR-146b-3p	hsa-miR-106a	MI0000113			-0.636606	2.899266e-13	5.023558e-9	7.176511e-10
8	hsa-miR-146b-3p	hsa-miR-128				0.636441	2.953193e-13	5.116997e-9	6.396247e-10
9	hsa-miR-146b-3p	hsa-miR-340	MI0000802			-0.627407	7.968825e-13	1.380758e-8	1.534176e-9
10	hsa-miR-146b-3p	hsa-miR-101				-0.622907	1.291149e-12	2.237174e-8	2.237174e-9
11	hsa-miR-146b-3p	hsa-let-7g	MI0000433			-0.621379	1.518353e-12	2.630851e-8	2.391682e-9
12	hsa-miR-146b-3p	hsa-miR-15a	MI0000069			-0.609318	5.294610e-12	9.173971e-8	7.644976e-9
13	hsa-miR-146b-3p	hsa-miR-328	MI0000804			0.609166	5.376742e-12	9.316281e-8	7.166370e-9
14	hsa-miR-146b-3p	hsa-miR-20b	MI0001519			-0.606351	7.141876e-12	1.237473e-7	8.839092e-9
15	hsa-miR-146b-3p	hsa-miR-454	MI0003820			-0.598789	1.510103e-11	2.616555e-7	1.744370e-8
16	hsa-miR-146b-3p	hsa-miR-193b	MI0003137			0.597261	1.752638e-11	3.036796e-7	1.897997e-8
17	hsa-miR-146b-3p	hsa-miR-324-3p				0.572434	1.773222e-10	3.072462e-6	1.807331e-7
18	hsa-miR-146b-3p	hsa-miR-15a-3p				-0.569844	2.232669e-10	3.868545e-6	2.149192e-7
19	hsa-miR-146b-3p	hsa-miR-18a	MI0000072			-0.565912	3.155787e-10	5.468032e-6	2.877912e-7
20	hsa-miR-146b-3p	hsa-miR-16				-0.562133	4.382254e-10	7.593131e-6	3.796566e-7
21	hsa-miR-146b-3p	hsa-miR-18b	MI0001518			-0.560812	4.910225e-10	8.507947e-6	4.051403e-7
22	hsa-miR-146b-3p	hsa-miR-190b	MI0005545			-0.555110	7.979162e-10	1.382549e-5	6.284315e-7
23	hsa-miR-146b-3p	hsa-miR-598	MI0003610			-0.554321	8.527214e-10	1.477510e-5	6.423958e-7
24	hsa-miR-146b-3p	hsa-miR-345	MI0000825			0.553215	9.357455e-10	1.621366e-5	6.755692e-7
25	hsa-miR-146b-3p	hsa-miR-99b	MI0000746			0.547170	1.545285e-9	2.677515e-5	1.071006e-6
26	hsa-miR-146b-3p	hsa-miR-190	MI0000486			-0.542866	2.195398e-9	3.803967e-5	1.463064e-6
27	hsa-miR-146b-3p	hsa-miR-195	MI0000489			-0.542042	2.346706e-9	4.066138e-5	1.505977e-6
28	hsa-miR-146b-3p	hsa-miR-30e	MI0000749			-0.539671	2.840259e-9	4.921318e-5	1.757613e-6
29	hsa-miR-146b-3p	hsa-miR-26b-3p				0.536387	3.690409e-9	6.394371e-5	2.204956e-6
30	hsa-miR-146b-3p	hsa-miR-19a	MI0000073			-0.534868	4.161600e-9	7.210804e-5	2.403601e-6
31	hsa-miR-146b-3p	hsa-miR-301a	MI0000745			-0.525504	8.618039e-9	1.493248e-4	4.816928e-6
32	hsa-miR-146b-3p	hsa-miR-20a	MI0000076			-0.524157	9.551836e-9	1.655047e-4	5.172021e-6
33	hsa-miR-146b-3p	hsa-miR-505	MI0003190			0.523831	9.792325e-9	1.696716e-4	5.141564e-6
34	hsa-miR-146b-3p	hsa-miR-148a	MI0000253			-0.520601	1.250659e-8	2.167016e-4	6.373577e-6
35	hsa-miR-146b-3p	hsa-miR-339-5p				0.518645	1.448684e-8	2.510135e-4	7.171814e-6
36	hsa-miR-146b-3p	hsa-miR-93	MI0000095			-0.517224	1.610946e-8	2.791286e-4	7.753573e-6
37	hsa-miR-146b-3p	hsa-miR-642				0.501240	5.145742e-8	8.916028e-4	2.409737e-5
38	hsa-miR-146b-3p	hsa-miR-103				-0.499097	5.985838e-8	1.037166e-3	2.729385e-5
39	hsa-miR-146b-3p	hsa-miR-126	MI0000471			-0.498926	6.058441e-8	1.049746e-3	2.691657e-5
40	hsa-miR-146b-3p	hsa-miR-106b	MI0000734			-0.496737	7.062132e-8	1.223656e-3	3.059139e-5
41	hsa-miR-146b-3p	hsa-miR-25-5p				-0.495311	7.799331e-8	1.351390e-3	3.296073e-5
42	hsa-miR-146b-3p	hsa-miR-326	MI0000808			0.494550	8.222323e-8	1.424682e-3	3.392100e-5
43	hsa-miR-146b-3p	hsa-let-7d	MI0000065			-0.492775	9.295626e-8	1.610653e-3	3.745705e-5
44	hsa-miR-146b-3p	hsa-miR-532-3p				0.483144	1.787283e-7	3.096826e-3	7.038241e-5
45	hsa-miR-146b-3p	hsa-miR-223-5p				-0.474362	3.188411e-7	5.524560e-3	1.227680e-4
46	hsa-miR-146b-3p	hsa-miR-374a	MI0000782			-0.464486	5.998525e-7	1.039364e-2	2.259488e-4
47	hsa-miR-146b-3p	hsa-miR-579	MI0003586			-0.463875	6.233824e-7	1.080135e-2	2.298159e-4
48	hsa-miR-146b-3p	hsa-miR-361-5p				0.457296	9.386839e-7	1.626458e-2	3.388453e-4
49	hsa-miR-146b-3p	hsa-miR-330-3p				0.454887	1.088134e-6	1.885409e-2	3.847774e-4
50	hsa-miR-146b-3p	hsa-miR-20a-3p				-0.453802	1.162627e-6	2.014484e-2	4.028969e-4

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.