[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 673.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
673	8103483	NC_001807

Fetching correlation data, please wait...
Getting list of correlations for id 673.
Getting list of p-values for id 673.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.061 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8103483	8113344	NC_001807		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8103483	8114207	NC_001807		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8103483	7946128	NM_032127	FAM160A2	0.486337	1.442259e-7	2.499002e-3	8.330007e-4
4	8103483	8086961	NM_004567	PFKFB4	0.479897	2.217963e-7	3.843065e-3	9.607662e-4
5	8103483	8155458	D14041	RBPJ	0.470538	4.082173e-7	7.073182e-3	1.414636e-3
6	8103483	7920128	NM_005620	S100A11	0.462198	6.925086e-7	1.199910e-2	1.999849e-3
7	8103483	7914648	NM_198040	PHC2	0.462033	6.996582e-7	1.212298e-2	1.731854e-3
8	8103483	8031207	NM_001130917	LILRA2	0.461056	7.436602e-7	1.288540e-2	1.610675e-3
9	8103483	7986110	NM_002005	FES	0.451817	1.311501e-6	2.272437e-2	2.524930e-3
10	8103483	7906107	NM_022367	SEMA4A	0.450944	1.382564e-6	2.395569e-2	2.395569e-3
11	8103483	7909285	NM_006212	PFKFB2	0.449563	1.502366e-6	2.603150e-2	2.366500e-3
12	8103483	7945944	NM_001665	RHOG	0.448239	1.626497e-6	2.818231e-2	2.348526e-3
13	8103483	8124798	NM_133471	KIAA1949	0.443575	2.145559e-6	3.717611e-2	2.859701e-3
14	8103483	8109999	NM_001031711	ERGIC1	0.440571	2.559145e-6	4.434230e-2	3.167307e-3
15	8103483	7934244	NM_001002762	DNAJB12	0.440546	2.562824e-6	4.440604e-2	2.960403e-3
16	8103483	8086330	NM_033027	CSRNP1	0.438758	2.843985e-6	4.927773e-2	3.079858e-3
17	8103483	7931353	NM_006504	PTPRE	0.438718	2.850578e-6	4.939196e-2	2.905410e-3
18	8103483	8153262	NM_001080431	SLC45A4	0.431286	4.366223e-6	7.565354e-2	4.202975e-3
19	8103483	8030782	NM_014441	SIGLEC9	0.430553	4.551167e-6	7.885808e-2	4.150425e-3
20	8103483	7940582	NM_004183	BEST1	0.426649	5.668014e-6	9.820968e-2	4.910484e-3
21	8103483	8108321	NM_001135647	FAM53C	0.424902	6.247372e-6	1.082482e-1	5.154677e-3
22	8103483	8027074	NM_002911	UPF1	0.423110	6.899581e-6	1.195490e-1	5.434047e-3
23	8103483	8072659	NR_024194	TOM1	0.419958	8.204507e-6	1.421595e-1	6.180848e-3
24	8103483	8016215	NM_199282	ARHGAP27	0.417132	9.569100e-6	1.658038e-1	6.908492e-3
25	8103483	7914500	AF258548	C1orf91	0.417095	9.588113e-6	1.661332e-1	6.645330e-3
26	8103483	8139500	NM_022748	TNS3	0.416372	9.970634e-6	1.727612e-1	6.644661e-3
27	8103483	8034202	NM_004283	RAB3D	0.415916	1.021957e-5	1.770745e-1	6.558314e-3
28	8103483	8039212	NM_005874	LILRB2	0.415892	1.023282e-5	1.773041e-1	6.332289e-3
29	8103483	8068593	NM_005239	ETS2	0.415084	1.068810e-5	1.851926e-1	6.385953e-3
30	8103483	8037045	NM_001817	CEACAM4	0.413477	1.165189e-5	2.018924e-1	6.729746e-3
31	8103483	8016847	NM_005082	TRIM25	0.412188	1.248271e-5	2.162879e-1	6.977028e-3
32	8103483	8165684	NC_001807		0.412001	1.260832e-5	2.184643e-1	6.827010e-3
33	8103483	8029107	NM_001815	CEACAM3	0.410361	1.375665e-5	2.383615e-1	7.223077e-3
34	8103483	8140371	NM_031925	TMEM120A	0.409476	1.441734e-5	2.498093e-1	7.347332e-3
35	8103483	8016239	NR_027774	PLEKHM1	0.409048	1.474712e-5	2.555233e-1	7.300667e-3
36	8103483	8039166	NM_024298	MBOAT7	0.407398	1.608580e-5	2.787186e-1	7.742183e-3
37	8103483	8032157	NM_014963	SBNO2	0.406165	1.716051e-5	2.973401e-1	8.036220e-3
38	8103483	7919743	NM_019032	ADAMTSL4	0.403997	1.921380e-5	3.329175e-1	8.760986e-3
39	8103483	8018761	NM_006456	ST6GALNAC2	0.403842	1.936925e-5	3.356109e-1	8.605408e-3
40	8103483	7984943	NM_021823	PPCDC	0.403314	1.990712e-5	3.449307e-1	8.623269e-3
41	8103483	8162231	NM_001142287	SEMA4D	0.403151	2.007698e-5	3.478738e-1	8.484726e-3
42	8103483	8150592	NM_005195	CEBPD	0.399733	2.394351e-5	4.148692e-1	9.877837e-3
43	8103483	7913357	NM_001397	ECE1	0.398271	2.580328e-5	4.470935e-1	1.039752e-2
44	8103483	8048518	NR_003063	TUBA4B	0.398056	2.608782e-5	4.520237e-1	1.027327e-2
45	8103483	8028851	NM_138392	SHKBP1	0.397845	2.637012e-5	4.569150e-1	1.015367e-2
46	8103483	7914904	NM_032017	STK40	0.396059	2.887456e-5	5.003094e-1	1.087629e-2
47	8103483	8032834	NM_052972	LRG1	0.394500	3.124054e-5	5.413049e-1	1.151712e-2
48	8103483	8052828	NM_152792	ASPRV1	0.392814	3.400438e-5	5.891939e-1	1.227487e-2
49	8103483	8115831	NM_004417	DUSP1	0.392631	3.431743e-5	5.946182e-1	1.213506e-2
50	8103483	8076441	NM_145912	NFAM1	0.392263	3.495520e-5	6.056687e-1	1.211337e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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