[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 7678.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7678	8019649	ENST00000384483

Fetching correlation data, please wait...
Getting list of correlations for id 7678.
Getting list of p-values for id 7678.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.116 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8019649	8014664	ENST00000384483		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8019649	8007990	ENST00000384483		0.980215	2.782653e-74	4.821503e-70	2.410751e-70
3	8019649	8122672	NM_015093	TAB2	0.811169	9.680821e-26	1.677396e-21	5.591320e-22
4	8019649	8018935			0.807020	2.647435e-25	4.587210e-21	1.146803e-21
5	8019649	8111739	NM_001465	FYB	0.801540	9.641001e-25	1.670496e-20	3.340992e-21
6	8019649	7928516	NM_144660	SAMD8	0.800103	1.343869e-24	2.328522e-20	3.880870e-21
7	8019649	7922504	NM_022457	RFWD2	0.795789	3.585306e-24	6.212260e-20	8.874657e-21
8	8019649	7964937	NM_144982	ZFC3H1	0.794188	5.129827e-24	8.888451e-20	1.111056e-20
9	8019649	7978932	NM_006939	SOS2	0.793925	5.439074e-24	9.424283e-20	1.047143e-20
10	8019649	8147580	NM_017890	VPS13B	0.790733	1.099532e-23	1.905158e-19	1.905158e-20
11	8019649	8162086	NM_015239	AGTPBP1	0.789572	1.416025e-23	2.453546e-19	2.230496e-20
12	8019649	7955787	NM_138473	SP1	0.788863	1.650966e-23	2.860628e-19	2.383857e-20
13	8019649	8045919	NM_022826	MARCH7	0.787897	2.033767e-23	3.523908e-19	2.710699e-20
14	8019649	8022767	NM_014939	KIAA1012	0.786945	2.494953e-23	4.323005e-19	3.087861e-20
15	8019649	8084541	NM_001009921	VPS8	0.786272	2.881066e-23	4.992023e-19	3.328015e-20
16	8019649	8120943	NM_016230	CYB5R4	0.785454	3.429058e-23	5.941529e-19	3.713456e-20
17	8019649	8121489	NM_001634	AMD1	0.785163	3.647493e-23	6.320011e-19	3.717654e-20
18	8019649	8173766	NM_153252	BRWD3	0.784560	4.144327e-23	7.180876e-19	3.989375e-20
19	8019649	7925257	NM_000081	LYST	0.783652	5.019231e-23	8.696822e-19	4.577275e-20
20	8019649	8068238	NM_207585	IFNAR2	0.783429	5.259721e-23	9.113519e-19	4.556759e-20
21	8019649	7968274	NM_175854	PAN3	0.782971	5.791360e-23	1.003469e-18	4.778424e-20
22	8019649	7950838	NM_007166	PICALM	0.782816	5.982642e-23	1.036612e-18	4.711875e-20
23	8019649	7918725	NM_015906	TRIM33	0.781191	8.394975e-23	1.454597e-18	6.324336e-20
24	8019649	8089801	NM_002093	GSK3B	0.780082	1.056277e-22	1.830212e-18	7.625883e-20
25	8019649	8045514	NM_001001664	SPOPL	0.779422	1.210161e-22	2.096846e-18	8.387383e-20
26	8019649	8111698	NM_152756	RICTOR	0.779262	1.250743e-22	2.167162e-18	8.335237e-20
27	8019649	8047419	NM_001228	CASP8	0.778695	1.405290e-22	2.434946e-18	9.018320e-20
28	8019649	7969796	NM_004800	TM9SF2	0.778551	1.447281e-22	2.507703e-18	8.956083e-20
29	8019649	7996954	NM_138714	NFAT5	0.778204	1.553756e-22	2.692193e-18	9.283426e-20
30	8019649	8097148	NM_015312	KIAA1109	0.777714	1.717230e-22	2.975444e-18	9.918145e-20
31	8019649	8169541	NM_144658	DOCK11	0.775842	2.511256e-22	4.351253e-18	1.403630e-19
32	8019649	7922889	NM_006469	IVNS1ABP	0.774805	3.094490e-22	5.361823e-18	1.675570e-19
33	8019649	8013908	NM_020772	NUFIP2	0.774281	3.437422e-22	5.956021e-18	1.804855e-19
34	8019649	7936596	NM_153810	C10orf46	0.774175	3.511571e-22	6.084499e-18	1.789559e-19
35	8019649	7988753	NM_032802	SPPL2A	0.773650	3.899997e-22	6.757525e-18	1.930722e-19
36	8019649	8068266	NM_000629	IFNAR1	0.773539	3.987980e-22	6.909973e-18	1.919437e-19
37	8019649	7925622	NM_015446	AHCTF1	0.773338	4.150895e-22	7.192256e-18	1.943853e-19
38	8019649	8163402	NM_005156	ROD1	0.773156	4.304283e-22	7.458031e-18	1.962640e-19
39	8019649	8168472	NM_000052	ATP7A	0.773040	4.405122e-22	7.632755e-18	1.957117e-19
40	8019649	8133809	NM_198467	RSBN1L	0.771813	5.619840e-22	9.737496e-18	2.434374e-19
41	8019649	8053064	NM_018221	MOBKL1B	0.771479	6.003359e-22	1.040202e-17	2.537078e-19
42	8019649	8136259	NM_013255	MKLN1	0.771285	6.237075e-22	1.080698e-17	2.573090e-19
43	8019649	8058509	NM_001080475	PLEKHM3	0.771233	6.302334e-22	1.092005e-17	2.539547e-19
44	8019649	7909011	NM_002393	MDM4	0.771131	6.429863e-22	1.114102e-17	2.532051e-19
45	8019649	7902822	NM_006256	PKN2	0.770836	6.815231e-22	1.180875e-17	2.624167e-19
46	8019649	8047839	NM_004379	CREB1	0.770349	7.500303e-22	1.299578e-17	2.825169e-19
47	8019649	7909931	NM_144695	C1orf58	0.769887	8.211991e-22	1.422892e-17	3.027429e-19
48	8019649	8049532	NM_001137550	LRRFIP1	0.769438	8.966278e-22	1.553587e-17	3.236640e-19
49	8019649	7933947	NM_022079	HERC4	0.769400	9.032820e-22	1.565117e-17	3.194116e-19
50	8019649	7970907	NM_014887	N4BP2L2	0.768798	1.015952e-21	1.760339e-17	3.520679e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation