[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 7977.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7977	8071051	AK126241	FLJ44253		hypothetical gene supported by AK096952; AK126241; BC068588

Fetching correlation data, please wait...
Getting list of correlations for id 7977.
Getting list of p-values for id 7977.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.086 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8071051	8071044			0.992867	5.789991e-97	1.003232e-92	1.003232e-92
2	8071051	8177120	NM_001033515	LOC100132288	0.900000	6.237355e-39	1.080746e-34	5.403732e-35
3	8071051	8104139	NR_027420	LOC389834	0.712607	1.522662e-17	2.638317e-13	8.794389e-14
4	8071051	8161554	ENST00000438157		0.608049	6.019706e-12	1.043035e-7	2.607586e-8
5	8071051	8161373	ENST00000438157		0.608049	6.019706e-12	1.043035e-7	2.086069e-8
6	8071051	8155455	AK126863	NCRNA00268	0.597845	1.655919e-11	2.869210e-7	4.782017e-8
7	8071051	8155707	NM_004817	TJP2	-0.434241	3.689845e-6	6.393394e-2	9.133420e-3
8	8071051	7951385	NM_004347	CASP5	-0.401945	2.136844e-5	3.702509e-1	4.628136e-2
9	8071051	8038899	NM_002029	FPR1	-0.393901	3.219796e-5	5.578941e-1	6.198823e-2
10	8071051	hsa-miR-941			-0.386705	4.605003e-5	7.979089e-1	7.979089e-2
11	8071051	8071049			0.377915	7.050983e-5	1.221724e+0	1.110658e-1
12	8071051	7967322	NM_006018	GPR109B	-0.368079	1.119695e-4	1.940095e+0	1.616746e-1
13	8071051	8155453	ENST00000369382		0.364990	1.290780e-4	2.236535e+0	1.720411e-1
14	8071051	8161375	ENST00000369382		0.364990	1.290780e-4	2.236535e+0	1.597525e-1
15	8071051	7946149	NM_001164	APBB1	0.364753	1.304855e-4	2.260922e+0	1.507281e-1
16	8071051	8030860	NM_001462	FPR2	-0.362146	1.469460e-4	2.546133e+0	1.591333e-1
17	8071051	7914603	NM_153341	RNF19B	-0.360455	1.586374e-4	2.748711e+0	1.616889e-1
18	8071051	8088813	NM_001126128	PROK2	-0.356296	1.911436e-4	3.311946e+0	1.839970e-1
19	8071051	7904478	AF172850	LOC51152	0.355504	1.979952e-4	3.430662e+0	1.805612e-1
20	8071051	7967318	NM_177551	GPR109A	-0.350823	2.433409e-4	4.216367e+0	2.108184e-1
21	8071051	8027862	NM_005306	FFAR2	-0.348228	2.724361e-4	4.720501e+0	2.247857e-1
22	8071051	8044919	NM_002881	RALB	-0.348096	2.740033e-4	4.747655e+0	2.158025e-1
23	8071051	8046124	NM_005771	DHRS9	-0.340340	3.817822e-4	6.615141e+0	2.876148e-1
24	8071051	8102024	NM_181886	UBE2D3	-0.338118	4.191918e-4	7.263336e+0	3.026390e-1
25	8071051	8171222	NM_001135565	HDHD1	0.337769	4.253608e-4	7.370227e+0	2.948091e-1
26	8071051	8064766	NM_001134338	RNF24	-0.337259	4.345315e-4	7.529128e+0	2.895818e-1
27	8071051	8154245	NM_025239	PDCD1LG2	-0.336536	4.478367e-4	7.759666e+0	2.873950e-1
28	8071051	7960850	NM_153449	SLC2A14	-0.336417	4.500611e-4	7.798209e+0	2.785075e-1
29	8071051	8009502	NM_000891	KCNJ2	-0.333418	5.096550e-4	8.830792e+0	3.045101e-1
30	8071051	8130556	NM_001024465	SOD2	-0.333296	5.122310e-4	8.875427e+0	2.958476e-1
31	8071051	7944769	NM_020716	GRAMD1B	-0.330833	5.667533e-4	9.820135e+0	3.167785e-1
32	8071051	8166243	NM_004726	REPS2	-0.330616	5.717840e-4	9.907301e+0	3.096032e-1
33	8071051	8161774	NM_017662	TRPM6	-0.330367	5.776483e-4	1.000891e+1	3.033004e-1
34	8071051	7932867	NM_001143770	ZNF438	-0.330263	5.801084e-4	1.005154e+1	2.956335e-1
35	8071051	7981242	NM_138576	BCL11B	0.330169	5.823369e-4	1.009015e+1	2.882901e-1
36	8071051	7907092	NM_003953	MPZL1	-0.329996	5.864401e-4	1.016125e+1	2.822569e-1
37	8071051	8054722	NM_000576	IL1B	-0.329340	6.023358e-4	1.043667e+1	2.820722e-1
38	8071051	8072735	NM_145343	APOL1	-0.328271	6.290586e-4	1.089970e+1	2.868342e-1
39	8071051	8037205	NM_001712	CEACAM1	-0.328260	6.293495e-4	1.090474e+1	2.796087e-1
40	8071051	8049297	NR_003008	SCARNA5	0.328063	6.343786e-4	1.099188e+1	2.747969e-1
41	8071051	8042391	NM_002664	PLEK	-0.327515	6.486084e-4	1.123844e+1	2.741083e-1
42	8071051	8082075	NM_138287	DTX3L	-0.327471	6.497588e-4	1.125837e+1	2.680564e-1
43	8071051	7964677	NM_152440	C12orf66	0.327085	6.599797e-4	1.143547e+1	2.659411e-1
44	8071051	7925062	NM_020808	SIPA1L2	-0.326886	6.653082e-4	1.152780e+1	2.619954e-1
45	8071051	7952046	NM_144765	MPZL2	-0.325815	6.946271e-4	1.203580e+1	2.674623e-1
46	8071051	8164304	NM_013443	ST6GALNAC6	0.325536	7.024678e-4	1.217166e+1	2.646013e-1
47	8071051	8110685	NR_024158	LOC25845	0.325012	7.173944e-4	1.243029e+1	2.644743e-1
48	8071051	8122457	NM_003764	STX11	-0.324875	7.213547e-4	1.249891e+1	2.603940e-1
49	8071051	7906107	NM_022367	SEMA4A	-0.324574	7.301031e-4	1.265050e+1	2.581734e-1
50	8071051	7923824	NM_173854	SLC41A1	0.324005	7.469099e-4	1.294171e+1	2.588341e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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