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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 8520.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
8520 8005547 NR_006880 SNORD3A link to infopage small nucleolar RNA, C/D box 3A

Fetching correlation data, please wait...
Getting list of correlations for id 8520.
Getting list of p-values for id 8520.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.067 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8005547 8013323 NR_006880 SNORD3A link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8005547 8013329 NR_006880 SNORD3A link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8005547 8013325 NR_006880 SNORD3A link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
4 8005547 8005553 NR_006880 SNORD3A link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
5 8005547 8009241 NR_004380 SNORD104 link to infopage 0.458513 8.707809e-7 1.508802e-2 3.017604e-3
6 8005547 7998852 NM_007108 TCEB2 link to infopage 0.445003 1.971967e-6 3.416827e-2 5.694712e-3
7 8005547 7960052 NR_002979 SNORA49 link to infopage 0.443305 2.179980e-6 3.777251e-2 5.396073e-3
8 8005547 8117368 NM_003542 HIST1H4C link to infopage 0.437872 2.993900e-6 5.187530e-2 6.484412e-3
9 8005547 8096025 ENST00000410322 link to infopage 0.423063 6.917560e-6 1.198606e-1 1.331784e-2
10 8005547 7981046 NM_032036 IFI27L2 link to infopage 0.422912 6.975329e-6 1.208615e-1 1.208615e-2
11 8005547 7977732 NR_002916 SNORD8 link to infopage 0.422550 7.116185e-6 1.233021e-1 1.120929e-2
12 8005547 8049299 NR_003006 SCARNA6 link to infopage 0.418574 8.847854e-6 1.533068e-1 1.277556e-2
13 8005547 7940667 NR_004390 SNORA57 link to infopage 0.413039 1.192825e-5 2.066808e-1 1.589853e-2
14 8005547 7953383 NR_004387 SCARNA10 link to infopage 0.409074 1.472671e-5 2.551697e-1 1.822641e-2
15 8005547 7920873 NR_002974 SNORA42 link to infopage 0.407392 1.609136e-5 2.788150e-1 1.858766e-2
16 8005547 7903162 NM_152487 TMEM56 link to infopage 0.399213 2.459077e-5 4.260843e-1 2.663027e-2
17 8005547 7995237 NM_016633 AHSP link to infopage 0.395928 2.906587e-5 5.036243e-1 2.962496e-2
18 8005547 8122194 ENST00000410157 link to infopage 0.392696 3.420509e-5 5.926716e-1 3.292620e-2
19 8005547 8050763 ENST00000380834 link to infopage 0.392268 3.494772e-5 6.055392e-1 3.187048e-2
20 8005547 8096663 NM_001008388 CISD2 link to infopage 0.390684 3.782246e-5 6.553497e-1 3.276749e-2
21 8005547 8135943 ENST00000364171 link to infopage 0.387184 4.497862e-5 7.793445e-1 3.711164e-2
22 8005547 8047379 link to infopage 0.372222 9.231694e-5 1.599576e+0 7.270798e-2
23 8005547 7977507 NR_002312 RPPH1 link to infopage 0.370269 1.011418e-4 1.752484e+0 7.619496e-2
24 8005547 8035939 ENST00000410539 link to infopage 0.369668 1.040103e-4 1.802187e+0 7.509113e-2
25 8005547 8091452 NM_001079809 TMEM183B link to infopage 0.367715 1.138684e-4 1.972998e+0 7.891993e-2
26 8005547 8097056 NR_002963 SNORA24 link to infopage 0.366533 1.202484e-4 2.083544e+0 8.013632e-2
27 8005547 8151592 NM_001738 CA1 link to infopage 0.365576 1.256550e-4 2.177224e+0 8.063792e-2
28 8005547 8031931 link to infopage 0.364588 1.314745e-4 2.278059e+0 8.135924e-2
29 8005547 8100376 link to infopage 0.362634 1.437285e-4 2.490383e+0 8.587529e-2
30 8005547 hsa-miR-766 MI0003836 link to infopage -0.360447 1.586921e-4 2.749658e+0 9.165528e-2
31 8005547 7923967 NM_018566 YOD1 link to infopage 0.360107 1.611441e-4 2.792144e+0 9.006915e-2
32 8005547 8054939 ENST00000411186 link to infopage 0.358468 1.734660e-4 3.005645e+0 9.392642e-2
33 8005547 hsa-miR-885-5p link to infopage -0.357650 1.799367e-4 3.117762e+0 9.447765e-2
34 8005547 hsa-miR-197 MI0000239 link to infopage -0.356338 1.907848e-4 3.305729e+0 9.722731e-2
35 8005547 8026875 NR_000012 SNORA68 link to infopage 0.356040 1.933315e-4 3.349855e+0 9.571015e-2
36 8005547 8098712 link to infopage 0.354630 2.058140e-4 3.566138e+0 9.905940e-2
37 8005547 8073334 NM_014248 RBX1 link to infopage 0.354120 2.105108e-4 3.647521e+0 9.858166e-2
38 8005547 8061227 NM_020689 SLC24A3 link to infopage 0.352977 2.213935e-4 3.836085e+0 1.009496e-1
39 8005547 8127542 ENST00000410392 link to infopage 0.352313 2.279573e-4 3.949816e+0 1.012773e-1
40 8005547 8100521 ENST00000410884 link to infopage 0.352098 2.301200e-4 3.987289e+0 9.968221e-2
41 8005547 hsa-miR-451 MI0001729 link to infopage 0.351893 2.321967e-4 4.023272e+0 9.812858e-2
42 8005547 8016016 ENST00000411162 link to infopage 0.351765 2.335089e-4 4.046008e+0 9.633353e-2
43 8005547 hsa-miR-324-3p link to infopage -0.351628 2.349124e-4 4.070327e+0 9.465878e-2
44 8005547 hsa-miR-211 MI0000287 link to infopage -0.351548 2.357362e-4 4.084602e+0 9.283186e-2
45 8005547 8040338 link to infopage 0.351170 2.396715e-4 4.152789e+0 9.228419e-2
46 8005547 7976515 NM_016417 GLRX5 link to infopage 0.349550 2.572319e-4 4.457057e+0 9.689255e-2
47 8005547 8065016 ENST00000410349 link to infopage 0.349248 2.606439e-4 4.516177e+0 9.608888e-2
48 8005547 7938625 ENST00000391063 link to infopage 0.346507 2.934730e-4 5.085006e+0 1.059376e-1
49 8005547 7956013 NM_001487 BLOC1S1 link to infopage 0.346369 2.952276e-4 5.115408e+0 1.043961e-1
50 8005547 7908867 NM_138391 TMEM183A link to infopage 0.346360 2.953461e-4 5.117462e+0 1.023492e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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