[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4881	8068231	NM_005806	OLIG2		oligodendrocyte lineage transcription factor 2

Fetching correlation data, please wait...
Getting list of correlations for id 4881.
Getting list of p-values for id 4881.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.141 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8068231	8013947	NM_032854	CORO6	0.743911	9.779246e-20	1.694450e-15	1.694450e-15
2	8068231	8099172	NM_001313	CRMP1	0.740069	1.889031e-19	3.273123e-15	1.636562e-15
3	8068231	8019699	NM_033059	KRTAP4-11	0.734284	4.981013e-19	8.630602e-15	2.876867e-15
4	8068231	7912004	NM_207370	GPR153	0.729302	1.125510e-18	1.950172e-14	4.875429e-15
5	8068231	8065580	NM_080611	DUSP15	0.725144	2.191747e-18	3.797639e-14	7.595279e-15
6	8068231	8153876	NM_025251	ARHGAP39	0.722346	3.409013e-18	5.906798e-14	9.844663e-15
7	8068231	8074131	NM_001080420	SHANK3	0.719007	5.735508e-18	9.937916e-14	1.419702e-14
8	8068231	7914974	NM_000831	GRIK3	0.716129	8.925910e-18	1.546593e-13	1.933241e-14
9	8068231	7896985	NM_080875	MIB2	0.716085	8.987027e-18	1.557182e-13	1.730202e-14
10	8068231	7926283	NM_003675	PRPF18	-0.714923	1.072790e-17	1.858823e-13	1.858823e-14
11	8068231	7942693	NM_138706	B3GNT6	0.711349	1.839088e-17	3.186587e-13	2.896898e-14
12	8068231	8152477	NM_006265	RAD21	-0.710756	2.009505e-17	3.481870e-13	2.901558e-14
13	8068231	8033023	NM_001134316	PRR22	0.709948	2.266643e-17	3.927413e-13	3.021087e-14
14	8068231	7937433	NM_000797	DRD4	0.707818	3.107559e-17	5.384467e-13	3.846048e-14
15	8068231	8060604	NM_000915	OXT	0.706754	3.634117e-17	6.296835e-13	4.197890e-14
16	8068231	8083094	NM_006506	RASA2	-0.704809	4.829273e-17	8.367682e-13	5.229801e-14
17	8068231	8166500	NM_003410	ZFX	-0.704579	4.994177e-17	8.653410e-13	5.090241e-14
18	8068231	8032214	NM_000156	GAMT	0.703408	5.918959e-17	1.025578e-12	5.697656e-14
19	8068231	8062658	NM_022896	LPIN3	0.703313	6.001215e-17	1.039831e-12	5.472792e-14
20	8068231	8061324	NM_012255	XRN2	-0.701910	7.347957e-17	1.273180e-12	6.365902e-14
21	8068231	8110237	NM_133369	UNC5A	0.699039	1.107853e-16	1.919577e-12	9.140845e-14
22	8068231	7908437	NM_024529	CDC73	-0.697429	1.391741e-16	2.411470e-12	1.096123e-13
23	8068231	7935535	NM_018058	CRTAC1	0.697218	1.433894e-16	2.484508e-12	1.080221e-13
24	8068231	8064031	NM_139317	BIRC7	0.696134	1.670385e-16	2.894277e-12	1.205949e-13
25	8068231	8054831	NM_001426	EN1	0.696028	1.695397e-16	2.937614e-12	1.175046e-13
26	8068231	8105463	NM_022913	GPBP1	-0.695967	1.710072e-16	2.963042e-12	1.139632e-13
27	8068231	8049919	NM_152783	D2HGDH	0.695726	1.768785e-16	3.064774e-12	1.135102e-13
28	8068231	8051882	NM_133259	LRPPRC	-0.695201	1.903833e-16	3.298771e-12	1.178133e-13
29	8068231	8067798	NM_018419	SOX18	0.694598	2.071420e-16	3.589150e-12	1.237638e-13
30	8068231	8030181	NM_033378	CGB2	0.694449	2.114699e-16	3.664138e-12	1.221379e-13
31	8068231	8113157	NM_014639	TTC37	-0.693830	2.305390e-16	3.994548e-12	1.288564e-13
32	8068231	8038288	NM_033377	CGB1	0.693055	2.567619e-16	4.448914e-12	1.390286e-13
33	8068231	7998577	NM_002513	NME3	0.692351	2.830615e-16	4.904607e-12	1.486245e-13
34	8068231	7981217	NM_018036	ATG2B	-0.692322	2.842040e-16	4.924403e-12	1.448354e-13
35	8068231	7940959	NM_020155	GPR137	0.692054	2.949411e-16	5.110444e-12	1.460127e-13
36	8068231	8174469	NM_012282	KCNE1L	0.691775	3.064902e-16	5.310555e-12	1.475154e-13
37	8068231	8151149	NM_006421	ARFGEF1	-0.691500	3.183463e-16	5.515987e-12	1.490807e-13
38	8068231	8070341	NM_033656	BRWD1	-0.691132	3.349031e-16	5.802865e-12	1.527070e-13
39	8068231	8062873	NM_022358	KCNK15	0.690638	3.584782e-16	6.211352e-12	1.592654e-13
40	8068231	7897006	NM_006983	MMP23B	0.689786	4.029154e-16	6.981315e-12	1.745329e-13
41	8068231	8036252	NM_015526	CLIP3	0.689755	4.046399e-16	7.011196e-12	1.710048e-13
42	8068231	8019367	NM_002917	RFNG	0.689667	4.095025e-16	7.095449e-12	1.689393e-13
43	8068231	7931519	NM_152643	KNDC1	0.689082	4.436385e-16	7.686924e-12	1.787657e-13
44	8068231	7903407	NM_020978	AMY2B	-0.689009	4.480513e-16	7.763384e-12	1.764406e-13
45	8068231	8148796	NM_001008271	SCXA	0.688842	4.584058e-16	7.942798e-12	1.765066e-13
46	8068231	8148821	NM_001008271	SCXA	0.688842	4.584058e-16	7.942798e-12	1.726695e-13
47	8068231	7922912	NM_003292	TPR	-0.688816	4.600091e-16	7.970577e-12	1.695867e-13
48	8068231	8094960	NM_152679	SLC10A4	0.688234	4.980115e-16	8.629045e-12	1.797718e-13
49	8068231	7926158	NM_153256	C10orf47	0.687816	5.270671e-16	9.132492e-12	1.863774e-13
50	8068231	8171762	NM_004586	RPS6KA3	-0.687611	5.420070e-16	9.391355e-12	1.878271e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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