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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
6433 8030181 NM_033378 CGB2 link to infopage chorionic gonadotropin, beta polypeptide 2

Fetching correlation data, please wait...
Getting list of correlations for id 6433.
Getting list of p-values for id 6433.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.183 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8030181 8038288 NM_033377 CGB1 link to infopage 0.938033 3.290169e-49 5.700875e-45 5.700875e-45
2 8030181 8038299 NM_033142 CGB7 link to infopage 0.921699 3.697899e-44 6.407350e-40 3.203675e-40
3 8030181 8038280 NM_000737 CGB link to infopage 0.876731 1.620160e-34 2.807252e-30 9.357506e-31
4 8030181 8038292 NM_033043 CGB5 link to infopage 0.871009 1.441711e-33 2.498053e-29 6.245131e-30
5 8030181 7958577 NM_032829 C12orf34 link to infopage 0.859150 9.762546e-32 1.691556e-27 3.383113e-28
6 8030181 8030187 NM_033043 CGB5 link to infopage 0.857754 1.563314e-31 2.708754e-27 4.514591e-28
7 8030181 8110382 NM_030567 PRR7 link to infopage 0.854574 4.485654e-31 7.772292e-27 1.110327e-27
8 8030181 7918416 NM_006492 ALX3 link to infopage 0.853635 6.093718e-31 1.055858e-26 1.319823e-27
9 8030181 7925446 link to infopage 0.851220 1.327434e-30 2.300045e-26 2.555606e-27
10 8030181 7911435 NM_001014980 FAM132A link to infopage 0.848648 2.995487e-30 5.190280e-26 5.190280e-27
11 8030181 8121209 NM_005604 POU3F2 link to infopage 0.847357 4.482281e-30 7.766449e-26 7.060408e-27
12 8030181 8013606 NM_000638 VTN link to infopage 0.847178 4.738853e-30 8.211011e-26 6.842509e-27
13 8030181 8153346 NM_023946 LYNX1 link to infopage 0.844451 1.095541e-29 1.898245e-25 1.460188e-26
14 8030181 7993165 link to infopage 0.844117 1.212362e-29 2.100660e-25 1.500471e-26
15 8030181 8131087 NM_001080461 UNCX link to infopage 0.843931 1.282966e-29 2.222994e-25 1.481996e-26
16 8030181 8074131 NM_001080420 SHANK3 link to infopage 0.843465 1.477016e-29 2.559225e-25 1.599516e-26
17 8030181 7905490 NM_178434 LCE3C link to infopage 0.843259 1.571797e-29 2.723453e-25 1.602031e-26
18 8030181 8039504 NM_001145176 SHISA7 link to infopage 0.839035 5.521093e-29 9.566398e-25 5.314666e-26
19 8030181 8137330 ENST00000356058 link to infopage 0.838805 5.906016e-29 1.023335e-24 5.385975e-26
20 8030181 8153876 NM_025251 ARHGAP39 link to infopage 0.837875 7.746454e-29 1.342228e-24 6.711140e-26
21 8030181 7940022 NM_178570 RTN4RL2 link to infopage 0.837786 7.950067e-29 1.377508e-24 6.559563e-26
22 8030181 7935983 NM_005029 PITX3 link to infopage 0.837351 9.019384e-29 1.562789e-24 7.103585e-26
23 8030181 7995310 ENST00000319817 link to infopage 0.834312 2.156148e-28 3.735957e-24 1.624329e-25
24 8030181 8064242 NR_027686 NCRNA00176 link to infopage 0.834044 2.326805e-28 4.031655e-24 1.679856e-25
25 8030181 8030015 NM_012451 SYNGR4 link to infopage 0.831185 5.191286e-28 8.994941e-24 3.597976e-25
26 8030181 8047736 link to infopage 0.830001 7.207158e-28 1.248784e-23 4.803017e-25
27 8030181 8036270 NM_152658 THAP8 link to infopage 0.829933 7.342819e-28 1.272290e-23 4.712186e-25
28 8030181 7973745 NM_005249 FOXG1 link to infopage 0.829804 7.610338e-28 1.318643e-23 4.709440e-25
29 8030181 8070771 NM_198691 KRTAP10-1 link to infopage 0.829047 9.371390e-28 1.623781e-23 5.599244e-25
30 8030181 8153862 NM_001024678 LRRC24 link to infopage 0.828972 9.565171e-28 1.657357e-23 5.524524e-25
31 8030181 8052018 NM_022055 KCNK12 link to infopage 0.828287 1.153513e-27 1.998691e-23 6.447391e-25
32 8030181 7945162 NM_003658 BARX2 link to infopage 0.828222 1.174319e-27 2.034742e-23 6.358570e-25
33 8030181 8098740 NM_033178 DUX4 link to infopage 0.828183 1.186845e-27 2.056446e-23 6.231654e-25
34 8030181 8059244 NM_024536 CHPF link to infopage 0.828033 1.236298e-27 2.142134e-23 6.300394e-25
35 8030181 8004763 NM_000180 GUCY2D link to infopage 0.827132 1.579334e-27 2.736512e-23 7.818606e-25
36 8030181 7992758 NM_172229 KREMEN2 link to infopage 0.826403 1.922966e-27 3.331923e-23 9.255342e-25
37 8030181 7947363 NM_024424 WT1 link to infopage 0.825677 2.338096e-27 4.051220e-23 1.094924e-24
38 8030181 7991459 NM_020211 RGMA link to infopage 0.825106 2.724531e-27 4.720796e-23 1.242315e-24
39 8030181 8013112 NM_016084 RASD1 link to infopage 0.824786 2.967461e-27 5.141719e-23 1.318389e-24
40 8030181 7950032 NM_002007 FGF4 link to infopage 0.824473 3.225828e-27 5.589392e-23 1.397348e-24
41 8030181 7928291 NM_004273 CHST3 link to infopage 0.823203 4.517920e-27 7.828200e-23 1.909317e-24
42 8030181 7911376 NM_001142467 HES4 link to infopage 0.823106 4.635358e-27 8.031685e-23 1.912306e-24
43 8030181 7998015 NM_032451 SPIRE2 link to infopage 0.822083 6.068428e-27 1.051477e-22 2.445294e-24
44 8030181 8024038 NM_001700 AZU1 link to infopage 0.822063 6.099787e-27 1.056910e-22 2.402068e-24
45 8030181 7952893 BC024764 IQSEC3 link to infopage 0.821412 7.232997e-27 1.253261e-22 2.785025e-24
46 8030181 8148821 NM_001008271 SCXA link to infopage 0.821274 7.498655e-27 1.299292e-22 2.824548e-24
47 8030181 8148796 NM_001008271 SCXA link to infopage 0.821274 7.498655e-27 1.299292e-22 2.764451e-24
48 8030181 8161265 NM_001007563 IGFBPL1 link to infopage 0.821226 7.593965e-27 1.315806e-22 2.741263e-24
49 8030181 8024100 NM_138690 GRIN3B link to infopage 0.821005 8.043116e-27 1.393631e-22 2.844144e-24
50 8030181 8098732 NM_033178 DUX4 link to infopage 0.820924 8.215437e-27 1.423489e-22 2.846977e-24

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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