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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
10790 8030187 NM_033043 CGB5 link to infopage chorionic gonadotropin, beta polypeptide 5
11419 8038292 NM_033043 CGB5 link to infopage chorionic gonadotropin, beta polypeptide 5

Fetching correlation data, please wait...
Getting list of correlations for id 10790.
Getting list of p-values for id 10790.
1 of 2 done.
Getting list of correlations for id 11419.
Getting list of p-values for id 11419.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.355 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8038292 8030187 NM_033043 CGB5 link to infopage 0.982816 2.092149e-77 7.250133e-73 7.250133e-73
2 8030187 8038292 NM_033043 CGB5 link to infopage 0.982816 2.092149e-77 7.250133e-73 3.625066e-73
3 8030187 8038280 NM_000737 CGB link to infopage 0.968734 3.590682e-64 1.244315e-59 4.147717e-60
4 8038292 8038280 NM_000737 CGB link to infopage 0.963188 1.401633e-60 4.857221e-56 1.214305e-56
5 8038292 8038299 NM_033142 CGB7 link to infopage 0.933857 8.501507e-48 2.946112e-43 5.892224e-44
6 8030187 8038299 NM_033142 CGB7 link to infopage 0.930944 7.262295e-47 2.516676e-42 4.194460e-43
7 8038292 8038288 NM_033377 CGB1 link to infopage 0.910767 2.335970e-41 8.095071e-37 1.156439e-37
8 8030187 8038288 NM_033377 CGB1 link to infopage 0.908399 8.465917e-41 2.933779e-36 3.667224e-37
9 8038292 8030181 NM_033378 CGB2 link to infopage 0.871009 1.441711e-33 4.996105e-29 5.551228e-30
10 8030187 8030181 NM_033378 CGB2 link to infopage 0.857754 1.563314e-31 5.417509e-27 5.417509e-28
11 8038292 7936762 NM_001001976 ATE1 link to infopage -0.829885 7.441605e-28 2.578814e-23 2.344376e-24
12 8030187 7936762 NM_001001976 ATE1 link to infopage -0.824194 3.474725e-27 1.204131e-22 1.003443e-23
13 8038292 8008201 NM_002507 NGFR link to infopage 0.819918 1.066702e-26 3.696549e-22 2.843499e-23
14 8038292 8003939 NM_003963 TM4SF5 link to infopage 0.815091 3.654033e-26 1.266269e-21 9.044776e-23
15 8038292 8074131 NM_001080420 SHANK3 link to infopage 0.810596 1.113970e-25 3.860352e-21 2.573568e-22
16 8038292 8147483 NM_178812 MTDH link to infopage -0.810185 1.231590e-25 4.267953e-21 2.667471e-22
17 8030187 8042335 NM_003375 VDAC2 link to infopage -0.807978 2.103593e-25 7.289791e-21 4.288112e-22
18 8030187 8151842 NM_015496 KIAA1429 link to infopage -0.807599 2.304410e-25 7.985702e-21 4.436501e-22
19 8038292 7945688 NR_003512 INS-IGF2 link to infopage 0.806973 2.677511e-25 9.278648e-21 4.883499e-22
20 8038292 8051187 NM_022823 FNDC4 link to infopage 0.806644 2.896684e-25 1.003817e-20 5.019084e-22
21 8038292 8042335 NM_003375 VDAC2 link to infopage -0.806077 3.317125e-25 1.149517e-20 5.473888e-22
22 8038292 8110237 NM_133369 UNC5A link to infopage 0.804844 4.444312e-25 1.540132e-20 7.000599e-22
23 8038292 8131056 NM_017781 CYP2W1 link to infopage 0.804578 4.733013e-25 1.640178e-20 7.131211e-22
24 8030187 8008201 NM_002507 NGFR link to infopage 0.804309 5.043499e-25 1.747774e-20 7.282392e-22
25 8038292 8049509 NM_015893 PRLH link to infopage 0.803439 6.188611e-25 2.144601e-20 8.578405e-22
26 8030187 8061529 NM_014012 REM1 link to infopage 0.803434 6.195632e-25 2.147034e-20 8.257825e-22
27 8038292 8121209 NM_005604 POU3F2 link to infopage 0.803300 6.393268e-25 2.215523e-20 8.205641e-22
28 8038292 7992181 NM_003294 TPSAB1 link to infopage 0.803027 6.815969e-25 2.362006e-20 8.435735e-22
29 8038292 7927367 NM_001040084 ANXA8 link to infopage 0.801970 8.722632e-25 3.022741e-20 1.042324e-21
30 8030187 7911941 NM_015557 CHD5 link to infopage 0.801362 1.004757e-24 3.481886e-20 1.160629e-21
31 8038292 8039605 NM_001005850 ZNF835 link to infopage 0.801259 1.028928e-24 3.565649e-20 1.150209e-21
32 8030187 8051187 NM_022823 FNDC4 link to infopage 0.800825 1.137698e-24 3.942577e-20 1.232055e-21
33 8038292 8151842 NM_015496 KIAA1429 link to infopage -0.800229 1.305567e-24 4.524311e-20 1.371003e-21
34 8038292 7939642 NM_052854 CREB3L1 link to infopage 0.800049 1.360711e-24 4.715408e-20 1.386885e-21
35 8038292 8150928 NM_003580 NSMAF link to infopage -0.798905 1.769145e-24 6.130795e-20 1.751656e-21
36 8038292 8004842 NM_173728 ARHGEF15 link to infopage 0.798847 1.792494e-24 6.211708e-20 1.725474e-21
37 8038292 8076677 NM_138415 PHF21B link to infopage 0.797531 2.419021e-24 8.382876e-20 2.265642e-21
38 8030187 8110237 NM_133369 UNC5A link to infopage 0.797444 2.467526e-24 8.550964e-20 2.250254e-21
39 8030187 7927367 NM_001040084 ANXA8 link to infopage 0.797421 2.480632e-24 8.596383e-20 2.204201e-21
40 8038292 7992845 NM_003456 ZNF205 link to infopage 0.797373 2.507768e-24 8.690419e-20 2.172605e-21
41 8038292 7973745 NM_005249 FOXG1 link to infopage 0.797181 2.618936e-24 9.075660e-20 2.213576e-21
42 8030187 7945688 NR_003512 INS-IGF2 link to infopage 0.796986 2.737264e-24 9.485716e-20 2.258504e-21
43 8038292 7911413 NM_003327 TNFRSF4 link to infopage 0.796936 2.768578e-24 9.594231e-20 2.231217e-21
44 8038292 7929840 NM_003987 PAX2 link to infopage 0.796804 2.852476e-24 9.884970e-20 2.246584e-21
45 8038292 8137330 ENST00000356058 link to infopage 0.796554 3.017707e-24 1.045756e-19 2.323903e-21
46 8030187 8121209 NM_005604 POU3F2 link to infopage 0.796553 3.018686e-24 1.046096e-19 2.274121e-21
47 8038292 8071489 NM_005446 P2RX6 link to infopage 0.795981 3.434066e-24 1.190041e-19 2.532002e-21
48 8038292 7931184 NM_005519 HMX2 link to infopage 0.795485 3.838433e-24 1.330171e-19 2.771189e-21
49 8038292 8110783 NM_198253 TERT link to infopage 0.795326 3.978022e-24 1.378544e-19 2.813354e-21
50 8030187 7911413 NM_003327 TNFRSF4 link to infopage 0.795317 3.986090e-24 1.381340e-19 2.762680e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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