[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4313	7927367	NM_001040084	ANXA8		annexin A8

Fetching correlation data, please wait...
Getting list of correlations for id 4313.
Getting list of p-values for id 4313.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7927367	7927307	NM_001630	ANXA8L2	0.986438	1.164191e-82	2.017195e-78	2.017195e-78
2	7927367	7933312	NM_001098845	ANXA8L1	0.902817	1.540668e-39	2.669516e-35	1.334758e-35
3	7927367	8131056	NM_017781	CYP2W1	0.864327	1.627923e-32	2.820702e-28	9.402339e-29
4	7927367	8125234	NM_019105	TNXB	0.848562	3.077356e-30	5.332135e-26	1.333034e-26
5	7927367	7935983	NM_005029	PITX3	0.846793	5.339028e-30	9.250934e-26	1.850187e-26
6	7927367	8039362	NM_178837	C19orf51	0.845221	8.660247e-30	1.500561e-25	2.500935e-26
7	7927367	7913450	NM_005529	HSPG2	0.844484	1.084455e-29	1.879036e-25	2.684337e-26
8	7927367	7937560	NM_002457	MUC2	0.844160	1.196593e-29	2.073337e-25	2.591671e-26
9	7927367	8121209	NM_005604	POU3F2	0.842442	2.009843e-29	3.482454e-25	3.869394e-26
10	7927367	8033487	NM_032447	FBN3	0.840126	4.005527e-29	6.940377e-25	6.940377e-26
11	7927367	7945688	NR_003512	INS-IGF2	0.839717	4.518266e-29	7.828800e-25	7.117091e-26
12	7927367	8110821	NM_001044	SLC6A3	0.837934	7.613498e-29	1.319191e-24	1.099326e-25
13	7927367	7933310	ENST00000319426		0.837563	8.482166e-29	1.469705e-24	1.130542e-25
14	7927367	7987701	NM_016642	SPTBN5	0.836382	1.193158e-28	2.067385e-24	1.476704e-25
15	7927367	8116033	NM_000505	F12	0.836233	1.245468e-28	2.158022e-24	1.438681e-25
16	7927367	8114550	NM_004883	NRG2	0.833845	2.461847e-28	4.265643e-24	2.666027e-25
17	7927367	8134827	NM_173564	C7orf51	0.833368	2.816525e-28	4.880192e-24	2.870701e-25
18	7927367	8032312	NM_138813	ATP8B3	0.833033	3.095537e-28	5.363636e-24	2.979798e-25
19	7927367	8075200	NM_012265	RHBDD3	0.832824	3.282704e-28	5.687941e-24	2.993653e-25
20	7927367	8038299	NM_033142	CGB7	0.832792	3.312518e-28	5.739600e-24	2.869800e-25
21	7927367	7931519	NM_152643	KNDC1	0.832729	3.371485e-28	5.841771e-24	2.781796e-25
22	7927367	8049536	NM_001137550	LRRFIP1	0.831834	4.332239e-28	7.506471e-24	3.412032e-25
23	7927367	8074131	NM_001080420	SHANK3	0.831191	5.183453e-28	8.981370e-24	3.904943e-25
24	7927367	8035648	NM_001001524	TM6SF2	0.830814	5.755717e-28	9.972931e-24	4.155388e-25
25	7927367	8064014	NM_022082	SLC17A9	0.830428	6.404839e-28	1.109766e-23	4.439066e-25
26	7927367	7914667	NM_052896	CSMD2	0.829250	8.861638e-28	1.535456e-23	5.905600e-25
27	7927367	8036072	NM_207392	KRTDAP	0.826349	1.951642e-27	3.381611e-23	1.252448e-24
28	7927367	8030448	NM_001136052	CPT1C	0.825674	2.340058e-27	4.054619e-23	1.448078e-24
29	7927367	8004842	NM_173728	ARHGEF15	0.824509	3.195016e-27	5.536005e-23	1.908967e-24
30	7927367	8159036	NM_139025	ADAMTS13	0.824168	3.498336e-27	6.061567e-23	2.020522e-24
31	7927367	7997801	NM_013278	IL17C	0.823677	3.985701e-27	6.906024e-23	2.227750e-24
32	7927367	8046922	NM_000090	COL3A1	0.823631	4.034067e-27	6.989827e-23	2.184321e-24
33	7927367	7950005	NM_001098515	MRGPRF	0.823467	4.213104e-27	7.300045e-23	2.212135e-24
34	7927367	7934367	NM_004034	ANXA7	-0.822288	5.749540e-27	9.962228e-23	2.930067e-24
35	7927367	7944882	NM_022370	ROBO3	0.822007	6.190084e-27	1.072556e-22	3.064445e-24
36	7927367	7973745	NM_005249	FOXG1	0.821892	6.380052e-27	1.105472e-22	3.070754e-24
37	7927367	7896921	NM_152228	TAS1R3	0.820508	9.154726e-27	1.586239e-22	4.287134e-24
38	7927367	8153876	NM_025251	ARHGAP39	0.820012	1.041201e-26	1.804089e-22	4.747602e-24
39	7927367	8086985	NM_000094	COL7A1	0.819358	1.232928e-26	2.136294e-22	5.477677e-24
40	7927367	8035249	NM_005234	NR2F6	0.819277	1.259122e-26	2.181680e-22	5.454201e-24
41	7927367	7952893	BC024764	IQSEC3	0.819168	1.294752e-26	2.243417e-22	5.471749e-24
42	7927367	8115691	NM_003062	SLIT3	0.818812	1.419238e-26	2.459113e-22	5.855031e-24
43	7927367	8156415	NM_006648	WNK2	0.818689	1.464829e-26	2.538110e-22	5.902581e-24
44	7927367	8038280	NM_000737	CGB	0.818641	1.482850e-26	2.569334e-22	5.839396e-24
45	7927367	8137783	NM_001097620	TMEM184A	0.818473	1.548295e-26	2.682730e-22	5.961622e-24
46	7927367	8037732	NM_001029861	NANOS2	0.818044	1.727868e-26	2.993878e-22	6.508429e-24
47	7927367	8008201	NM_002507	NGFR	0.817271	2.104817e-26	3.647016e-22	7.759609e-24
48	7927367	7936762	NM_001001976	ATE1	-0.817102	2.197510e-26	3.807626e-22	7.932555e-24
49	7927367	8165538	NM_001033113	ENTPD8	0.817071	2.214763e-26	3.837519e-22	7.831672e-24
50	7927367	7992147	NM_021098	CACNA1H	0.817060	2.220956e-26	3.848251e-22	7.696502e-24

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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