[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6052	8116033	NM_000505	F12		coagulation factor XII (Hageman factor)

Fetching correlation data, please wait...
Getting list of correlations for id 6052.
Getting list of p-values for id 6052.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.162 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8116033	8079021	NM_001904	CTNNB1	-0.836861	1.039223e-28	1.800662e-24	1.800662e-24
2	8116033	8096556	NM_015143	METAP1	-0.836412	1.182947e-28	2.049692e-24	1.024846e-24
3	8116033	7927367	NM_001040084	ANXA8	0.836233	1.245468e-28	2.158022e-24	7.193407e-25
4	8116033	7927307	NM_001630	ANXA8L2	0.832268	3.837405e-28	6.649071e-24	1.662268e-24
5	8116033	8028407	NM_000540	RYR1	0.831440	4.835875e-28	8.379121e-24	1.675824e-24
6	8116033	7937560	NM_002457	MUC2	0.829508	8.255694e-28	1.430464e-23	2.384107e-24
7	8116033	7947991	NM_015231	NUP160	-0.828962	9.591523e-28	1.661923e-23	2.374176e-24
8	8116033	7897890	NM_015378	VPS13D	-0.828422	1.111790e-27	1.926398e-23	2.407997e-24
9	8116033	7968260	NM_145657	GSX1	0.820966	8.125681e-27	1.407937e-22	1.564374e-23
10	8116033	8035517	NM_000095	COMP	0.819039	1.338719e-26	2.319599e-22	2.319599e-23
11	8116033	8105778	NM_181523	PIK3R1	-0.818950	1.369588e-26	2.373085e-22	2.157350e-23
12	8116033	8100902	NM_032217	ANKRD17	-0.818700	1.460504e-26	2.530615e-22	2.108846e-23
13	8116033	8151609	NM_172239	REXO1L1	0.817030	2.238408e-26	3.878490e-22	2.983454e-23
14	8116033	8075200	NM_012265	RHBDD3	0.817007	2.251406e-26	3.901012e-22	2.786437e-23
15	8116033	7974771	NM_022495	C14orf135	-0.816795	2.375753e-26	4.116468e-22	2.744312e-23
16	8116033	8114550	NM_004883	NRG2	0.816578	2.510506e-26	4.349954e-22	2.718721e-23
17	8116033	7942123	NM_053056	CCND1	0.816411	2.619031e-26	4.537996e-22	2.669409e-23
18	8116033	7920744	NM_000298	PKLR	0.815806	3.052254e-26	5.288640e-22	2.938133e-23
19	8116033	8110821	NM_001044	SLC6A3	0.815718	3.120607e-26	5.407075e-22	2.845829e-23
20	8116033	8099926	NM_001100399	PDS5A	-0.814914	3.820270e-26	6.619381e-22	3.309691e-23
21	8116033	8125383	NM_004557	NOTCH4	0.814384	4.362832e-26	7.559479e-22	3.599752e-23
22	8116033	7917156	NM_003902	FUBP1	-0.814238	4.525224e-26	7.840856e-22	3.564025e-23
23	8116033	7952893	BC024764	IQSEC3	0.813752	5.109119e-26	8.852571e-22	3.848944e-23
24	8116033	7913571	NM_001102398	HNRNPR	-0.813387	5.595805e-26	9.695851e-22	4.039938e-23
25	8116033	8125234	NM_019105	TNXB	0.813270	5.761301e-26	9.982606e-22	3.993043e-23
26	8116033	8036072	NM_207392	KRTDAP	0.812949	6.239306e-26	1.081085e-21	4.158018e-23
27	8116033	8121209	NM_005604	POU3F2	0.810186	1.231433e-25	2.133704e-21	7.902608e-23
28	8116033	8024605	NM_021938	CELF5	0.809891	1.323276e-25	2.292840e-21	8.188714e-23
29	8116033	7942717	NM_000260	MYO7A	0.809063	1.618351e-25	2.804116e-21	9.669366e-23
30	8116033	7987701	NM_016642	SPTBN5	0.808933	1.669936e-25	2.893498e-21	9.644992e-23
31	8116033	7935983	NM_005029	PITX3	0.808523	1.844212e-25	3.195466e-21	1.030795e-22
32	8116033	8133704	NM_001110199	SRRM3	0.808361	1.917698e-25	3.322795e-21	1.038373e-22
33	8116033	8005328	NM_016239	MYO15A	0.807381	2.428007e-25	4.207007e-21	1.274851e-22
34	8116033	8051622	NM_001031684	SRSF7	-0.807232	2.516499e-25	4.360339e-21	1.282453e-22
35	8116033	8033487	NM_032447	FBN3	0.806674	2.876077e-25	4.983378e-21	1.423822e-22
36	8116033	8086810	NM_003074	SMARCC1	-0.806182	3.234996e-25	5.605277e-21	1.557021e-22
37	8116033	8116272	NM_014244	ADAMTS2	0.805644	3.677066e-25	6.371252e-21	1.721960e-22
38	8116033	8032088	NM_214710	PRSSL1	0.805488	3.815916e-25	6.611837e-21	1.739957e-22
39	8116033	8136401	NM_015135	NUP205	-0.805232	4.054122e-25	7.024577e-21	1.801174e-22
40	8116033	7992147	NM_021098	CACNA1H	0.804745	4.550254e-25	7.884225e-21	1.971056e-22
41	8116033	7983663	NM_005154	USP8	-0.804434	4.896482e-25	8.484135e-21	2.069301e-22
42	8116033	7949679	NM_006946	SPTBN2	0.803409	6.233050e-25	1.080001e-20	2.571430e-22
43	8116033	7936762	NM_001001976	ATE1	-0.803015	6.834996e-25	1.184300e-20	2.754186e-22
44	8116033	8054804	NM_019044	CCDC93	-0.802943	6.951222e-25	1.204438e-20	2.737360e-22
45	8116033	8000467	NM_001109763	GSG1L	0.802560	7.603031e-25	1.317377e-20	2.927505e-22
46	8116033	7913450	NM_005529	HSPG2	0.802492	7.723515e-25	1.338253e-20	2.909247e-22
47	8116033	8112121	NM_173514	SLC38A9	-0.802427	7.842888e-25	1.358937e-20	2.891356e-22
48	8116033	8112072	NM_021147	CCNO	0.801242	1.033108e-24	1.790066e-20	3.729305e-22
49	8116033	8067011	NM_015339	ADNP	-0.800820	1.139085e-24	1.973693e-20	4.027945e-22
50	8116033	7930663	NM_198496	VWA2	0.800815	1.140222e-24	1.975662e-20	3.951325e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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