[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2502	8035517	NM_000095	COMP		cartilage oligomeric matrix protein

Fetching correlation data, please wait...
Getting list of correlations for id 2502.
Getting list of p-values for id 2502.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8035517	8116033	NM_000505	F12	0.819039	1.338719e-26	2.319599e-22	2.319599e-22
2	8035517	8033462	NM_206833	CTXN1	0.783018	5.733530e-23	9.934487e-19	4.967243e-19
3	8035517	7929840	NM_003987	PAX2	0.780913	8.893680e-23	1.541008e-18	5.136693e-19
4	8035517	7987701	NM_016642	SPTBN5	0.779585	1.170272e-22	2.027731e-18	5.069327e-19
5	8035517	7920744	NM_000298	PKLR	0.777836	1.675126e-22	2.902490e-18	5.804981e-19
6	8035517	8121209	NM_005604	POU3F2	0.776751	2.088927e-22	3.619483e-18	6.032472e-19
7	8035517	7946354	NM_002315	LMO1	0.766766	1.506435e-21	2.610200e-17	3.728857e-18
8	8035517	7942123	NM_053056	CCND1	0.766370	1.626038e-21	2.817436e-17	3.521794e-18
9	8035517	8087116	NM_001008269	TMEM89	0.765827	1.804983e-21	3.127493e-17	3.474992e-18
10	8035517	8042537	NM_001692	ATP6V1B1	0.765416	1.952931e-21	3.383843e-17	3.383843e-18
11	8035517	8110821	NM_001044	SLC6A3	0.761410	4.176423e-21	7.236487e-17	6.578625e-18
12	8035517	8155942	NM_001013735	FOXB2	0.760612	4.850798e-21	8.404978e-17	7.004148e-18
13	8035517	7973580	NM_203402	FITM1	0.759604	5.854716e-21	1.014447e-16	7.803436e-18
14	8035517	8039362	NM_178837	C19orf51	0.758949	6.613076e-21	1.145848e-16	8.184627e-18
15	8035517	7944447	NM_022169	ABCG4	0.758946	6.616716e-21	1.146478e-16	7.643189e-18
16	8035517	8037785	NM_033258	GNG8	0.758812	6.783052e-21	1.175299e-16	7.345621e-18
17	8035517	7937560	NM_002457	MUC2	0.758779	6.824807e-21	1.182534e-16	6.956084e-18
18	8035517	8016168	NM_133373	PLCD3	0.757928	7.990289e-21	1.384477e-16	7.691541e-18
19	8035517	8026390	NM_173482	CCDC105	0.757784	8.205575e-21	1.421780e-16	7.483053e-18
20	8035517	8073449	NM_014460	CSDC2	0.757393	8.818280e-21	1.527943e-16	7.639717e-18
21	8035517	8064242	NR_027686	NCRNA00176	0.756999	9.481748e-21	1.642903e-16	7.823345e-18
22	8035517	8028407	NM_000540	RYR1	0.756335	1.071178e-20	1.856029e-16	8.436497e-18
23	8035517	7992147	NM_021098	CACNA1H	0.755951	1.149196e-20	1.991213e-16	8.657447e-18
24	8035517	8024605	NM_021938	CELF5	0.755031	1.359233e-20	2.355143e-16	9.813097e-18
25	8035517	7906307	NM_018240	KIRREL	0.754924	1.386013e-20	2.401545e-16	9.606180e-18
26	8035517	7896985	NM_080875	MIB2	0.754305	1.551230e-20	2.687816e-16	1.033775e-17
27	8035517	8036072	NM_207392	KRTDAP	0.753611	1.759007e-20	3.047832e-16	1.128827e-17
28	8035517	7897006	NM_006983	MMP23B	0.753427	1.818702e-20	3.151264e-16	1.125452e-17
29	8035517	8079021	NM_001904	CTNNB1	-0.753018	1.958144e-20	3.392876e-16	1.169957e-17
30	8035517	7908812	NM_004767	GPR37L1	0.752821	2.029000e-20	3.515648e-16	1.171883e-17
31	8035517	7950032	NM_002007	FGF4	0.752746	2.056548e-20	3.563381e-16	1.149478e-17
32	8035517	8007363	NM_032387	WNK4	0.751248	2.691330e-20	4.663267e-16	1.457271e-17
33	8035517	7913450	NM_005529	HSPG2	0.750842	2.893430e-20	5.013447e-16	1.519226e-17
34	8035517	8134407	NM_005222	DLX6	0.750780	2.926113e-20	5.070075e-16	1.491199e-17
35	8035517	8158009	NM_014580	SLC2A8	0.749642	3.583154e-20	6.208530e-16	1.773866e-17
36	8035517	8131056	NM_017781	CYP2W1	0.749444	3.711284e-20	6.430541e-16	1.786261e-17
37	8035517	8060604	NM_000915	OXT	0.749257	3.836354e-20	6.647250e-16	1.796554e-17
38	8035517	7992758	NM_172229	KREMEN2	0.749146	3.912136e-20	6.778559e-16	1.783831e-17
39	8035517	7952893	BC024764	IQSEC3	0.749111	3.936503e-20	6.820779e-16	1.748918e-17
40	8035517	7931097	NM_002775	HTRA1	0.748063	4.737842e-20	8.209259e-16	2.052315e-17
41	8035517	8037788	NM_145056	DACT3	0.747831	4.934849e-20	8.550613e-16	2.085515e-17
42	8035517	7910520	NM_014236	GNPAT	-0.747521	5.211586e-20	9.030115e-16	2.150027e-17
43	8035517	8030015	NM_012451	SYNGR4	0.747265	5.451724e-20	9.446202e-16	2.196791e-17
44	8035517	8093440	NM_001004356	FGFRL1	0.746675	6.045566e-20	1.047515e-15	2.380716e-17
45	8035517	7927367	NM_001040084	ANXA8	0.746290	6.466540e-20	1.120457e-15	2.489905e-17
46	8035517	7991939	NM_145294	WDR90	0.746020	6.779774e-20	1.174731e-15	2.553764e-17
47	8035517	7991828	ENST00000431654		0.745506	7.414908e-20	1.284781e-15	2.733577e-17
48	8035517	7927307	NM_001630	ANXA8L2	0.745325	7.651787e-20	1.325825e-15	2.762136e-17
49	8035517	7920552	NM_002249	KCNN3	0.744703	8.525341e-20	1.477186e-15	3.014665e-17
50	8035517	8151609	NM_172239	REXO1L1	0.744654	8.598417e-20	1.489848e-15	2.979695e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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