[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
4722	8125234	NM_019105	TNXB		tenascin XB
5500	8178712	NM_032470	TNXB		tenascin XB
5501	8179935	NM_032470	TNXB		tenascin XB

Fetching correlation data, please wait...
Getting list of correlations for id 4722.
Getting list of p-values for id 4722.
1 of 3 done.
Getting list of correlations for id 5500.
Getting list of p-values for id 5500.
2 of 3 done.
Getting list of correlations for id 5501.
Getting list of p-values for id 5501.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.280 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178712	8179935	NM_032470	TNXB	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179935	8178712	NM_032470	TNXB	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8179935	8125289	NR_001284	TNXA	0.923199	1.419782e-44	7.380166e-40	2.460055e-40
4	8178712	8125289	NR_001284	TNXA	0.923199	1.419782e-44	7.380166e-40	1.845042e-40
5	8125234	7945688	NR_003512	INS-IGF2	0.853826	5.726266e-31	2.976570e-26	5.953141e-27
6	8125234	8133704	NM_001110199	SRRM3	0.852150	9.853071e-31	5.121725e-26	8.536208e-27
7	8125234	7927367	NM_001040084	ANXA8	0.848562	3.077356e-30	1.599640e-25	2.285201e-26
8	8125234	8075200	NM_012265	RHBDD3	0.847707	4.020384e-30	2.089836e-25	2.612295e-26
9	8125234	7927307	NM_001630	ANXA8L2	0.844465	1.090752e-29	5.669840e-25	6.299822e-26
10	8179935	8125234	NM_019105	TNXB	0.842841	1.782965e-29	9.268028e-25	9.268028e-26
11	8125234	8179935	NM_032470	TNXB	0.842841	1.782965e-29	9.268028e-25	8.425480e-26
12	8125234	8178712	NM_032470	TNXB	0.842841	1.782965e-29	9.268028e-25	7.723356e-26
13	8178712	8125234	NM_019105	TNXB	0.842841	1.782965e-29	9.268028e-25	7.129252e-26
14	8125234	7966690	NM_016569	TBX3	0.841776	2.453398e-29	1.275301e-24	9.109293e-26
15	8125234	8098512	NM_021942	C4orf41	-0.841587	2.595949e-29	1.349400e-24	8.996000e-26
16	8125234	7935983	NM_005029	PITX3	0.840890	3.194384e-29	1.660473e-24	1.037796e-25
17	8125234	8039362	NM_178837	C19orf51	0.837528	8.567636e-29	4.453543e-24	2.619731e-25
18	8125234	8044263	NM_006267	RANBP2	-0.837309	9.129513e-29	4.745612e-24	2.636451e-25
19	8125234	7930956	NM_007190	SEC23IP	-0.836767	1.067688e-28	5.549947e-24	2.921025e-25
20	8125234	8125289	NR_001284	TNXA	0.836613	1.116455e-28	5.803446e-24	2.901723e-25
21	8125234	8070933	NM_006657	FTCD	0.835245	1.653112e-28	8.593041e-24	4.091924e-25
22	8125234	7937560	NM_002457	MUC2	0.835201	1.674174e-28	8.702525e-24	3.955693e-25
23	8125234	8121209	NM_005604	POU3F2	0.834041	2.328919e-28	1.210595e-23	5.263458e-25
24	8125234	8083094	NM_006506	RASA2	-0.832224	3.885105e-28	2.019516e-23	8.414651e-25
25	8125234	8153346	NM_023946	LYNX1	0.831958	4.184913e-28	2.175360e-23	8.701439e-25
26	8125234	8112121	NM_173514	SLC38A9	-0.830656	6.013553e-28	3.125905e-23	1.202271e-24
27	8125234	8032088	NM_214710	PRSSL1	0.830358	6.530103e-28	3.394413e-23	1.257190e-24
28	8125234	7903239	NM_000028	AGL	-0.830242	6.743679e-28	3.505432e-23	1.251940e-24
29	8125234	8016168	NM_133373	PLCD3	0.828702	1.029959e-27	5.353829e-23	1.846148e-24
30	8125234	8159036	NM_139025	ADAMTS13	0.828063	1.226188e-27	6.373848e-23	2.124616e-24
31	8125234	8115691	NM_003062	SLIT3	0.827613	1.386179e-27	7.205497e-23	2.324354e-24
32	8125234	7897416	NM_001080397	SLC45A1	0.826639	1.804363e-27	9.379260e-23	2.931019e-24
33	8125234	8002845	NM_001025200	CTRB2	0.825945	2.175610e-27	1.130904e-22	3.426981e-24
34	8125234	8153101	NM_152888	COL22A1	0.825337	2.561157e-27	1.331315e-22	3.915632e-24
35	8125234	8024100	NM_138690	GRIN3B	0.825210	2.649794e-27	1.377389e-22	3.935398e-24
36	8125234	8087116	NM_001008269	TMEM89	0.824754	2.993288e-27	1.555941e-22	4.322059e-24
37	8125234	8063796	NM_001794	CDH4	0.824240	3.432449e-27	1.784221e-22	4.822219e-24
38	8125234	8006865	NM_032192	PPP1R1B	0.823562	4.109045e-27	2.135922e-22	5.620849e-24
39	8125234	8092888	NM_138399	TMEM44	0.823126	4.610970e-27	2.396828e-22	6.145714e-24
40	8125234	8165538	NM_001033113	ENTPD8	0.822946	4.835642e-27	2.513615e-22	6.284038e-24
41	8125234	7911435	NM_001014980	FAM132A	0.822576	5.330301e-27	2.770744e-22	6.757912e-24
42	8125234	8064059	NM_020882	COL20A1	0.822553	5.362542e-27	2.787503e-22	6.636912e-24
43	8125234	8093826	NM_000683	ADRA2C	0.822218	5.856103e-27	3.044061e-22	7.079211e-24
44	8125234	7949015	NM_001144936	C11orf95	0.822141	5.975680e-27	3.106218e-22	7.059587e-24
45	8125234	7952893	BC024764	IQSEC3	0.821894	6.376800e-27	3.314724e-22	7.366054e-24
46	8125234	8079021	NM_001904	CTNNB1	-0.821736	6.645487e-27	3.454391e-22	7.509545e-24
47	8125234	8006562	NM_033315	RASL10B	0.821538	6.999723e-27	3.638526e-22	7.741544e-24
48	8125234	7992049	NM_207112	HAGHL	0.820823	8.434384e-27	4.384277e-22	9.133911e-24
49	8125234	8105778	NM_181523	PIK3R1	-0.820177	9.976639e-27	5.185957e-22	1.058359e-23
50	8125234	8078479	NM_013374	PDCD6IP	-0.819904	1.070762e-26	5.565929e-22	1.113186e-23

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation