[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 5500.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5500	8178712	NM_032470	TNXB		tenascin XB

Fetching correlation data, please wait...
Getting list of correlations for id 5500.
Getting list of p-values for id 5500.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.123 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178712	8179935	NM_032470	TNXB	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8178712	8125289	NR_001284	TNXA	0.923199	1.419782e-44	2.460055e-40	1.230028e-40
3	8178712	8125234	NM_019105	TNXB	0.842841	1.782965e-29	3.089343e-25	1.029781e-25
4	8178712	8087116	NM_001008269	TMEM89	0.753845	1.686185e-20	2.921652e-16	7.304131e-17
5	8178712	8024048	NM_002777	PRTN3	0.736253	3.591412e-19	6.222840e-15	1.244568e-15
6	8178712	8027040	NM_012109	TMEM59L	0.732309	6.896031e-19	1.194875e-14	1.991459e-15
7	8178712	7986822	NM_000814	GABRB3	0.727638	1.471598e-18	2.549837e-14	3.642624e-15
8	8178712	8150928	NM_003580	NSMAF	-0.725901	1.943124e-18	3.366850e-14	4.208563e-15
9	8178712	8104838	NM_194283	DNAJC21	-0.724444	2.449250e-18	4.243815e-14	4.715350e-15
10	8178712	8093826	NM_000683	ADRA2C	0.722343	3.410999e-18	5.910238e-14	5.910238e-15
11	8178712	8040985	NM_032434	ZNF512	-0.722116	3.534385e-18	6.124029e-14	5.567299e-15
12	8178712	8045619	NM_015630	EPC2	-0.721224	4.063870e-18	7.041468e-14	5.867890e-15
13	8178712	7998749	NM_022372	MLST8	0.720764	4.366070e-18	7.565089e-14	5.819299e-15
14	8178712	8110783	NM_198253	TERT	0.719375	5.417469e-18	9.386848e-14	6.704892e-15
15	8178712	8064059	NM_020882	COL20A1	0.718859	5.867760e-18	1.016707e-13	6.778045e-15
16	8178712	8158372	NM_003011	SET	-0.718597	6.111043e-18	1.058860e-13	6.617877e-15
17	8178712	8032088	NM_214710	PRSSL1	0.718348	6.350299e-18	1.100316e-13	6.472449e-15
18	8178712	8013022	NM_001113567	C17orf76	0.718226	6.470954e-18	1.121222e-13	6.229013e-15
19	8178712	7910446	NM_007357	COG2	-0.716252	8.759868e-18	1.517822e-13	7.988539e-15
20	8178712	8067394	NM_007232	HRH3	0.714692	1.111078e-17	1.925166e-13	9.625828e-15
21	8178712	8133704	NM_001110199	SRRM3	0.713891	1.254463e-17	2.173608e-13	1.035051e-14
22	8178712	7897006	NM_006983	MMP23B	0.713483	1.334224e-17	2.311810e-13	1.050823e-14
23	8178712	8035249	NM_005234	NR2F6	0.712711	1.498961e-17	2.597250e-13	1.129239e-14
24	8178712	8062948	NM_014276	RBPJL	0.709039	2.594233e-17	4.495027e-13	1.872928e-14
25	8178712	8110522	NM_001746	CANX	-0.708968	2.621820e-17	4.542828e-13	1.817131e-14
26	8178712	8019699	NM_033059	KRTAP4-11	0.708482	2.817347e-17	4.881617e-13	1.877545e-14
27	8178712	7971820	NM_016075	VPS36	-0.707004	3.503316e-17	6.070196e-13	2.248221e-14
28	8178712	8009040	NM_006039	MRC2	0.706919	3.547334e-17	6.146466e-13	2.195166e-14
29	8178712	8111629	NM_153485	NUP155	-0.706578	3.729439e-17	6.461998e-13	2.228275e-14
30	8178712	8037737	NM_002516	NOVA2	0.704334	5.175444e-17	8.967491e-13	2.989164e-14
31	8178712	8007115	NM_001146041	KRTAP4-9	0.704137	5.325068e-17	9.226745e-13	2.976369e-14
32	8178712	8100834	NM_002092	GRSF1	-0.703064	6.221436e-17	1.077988e-12	3.368713e-14
33	8178712	7979876	ENST00000413777		0.702429	6.818186e-17	1.181387e-12	3.579961e-14
34	8178712	8169519	NM_019045	WDR44	-0.701976	7.278064e-17	1.261070e-12	3.709030e-14
35	8178712	8063283	NM_001316	CSE1L	-0.701665	7.611712e-17	1.318881e-12	3.768232e-14
36	8178712	8071234	NM_002688	SEPT5	0.701073	8.285914e-17	1.435700e-12	3.988056e-14
37	8178712	7930956	NM_007190	SEC23IP	-0.700749	8.680452e-17	1.504062e-12	4.065032e-14
38	8178712	7932433	NM_182543	NSUN6	-0.700702	8.738911e-17	1.514191e-12	3.984713e-14
39	8178712	8025041	NM_139161	CRB3	0.700445	9.065740e-17	1.570821e-12	4.027746e-14
40	8178712	8059689	NM_005381	NCL	-0.700374	9.158302e-17	1.586859e-12	3.967147e-14
41	8178712	8136401	NM_015135	NUP205	-0.700300	9.255408e-17	1.603685e-12	3.911426e-14
42	8178712	8126018	NM_007271	STK38	-0.700142	9.467866e-17	1.640497e-12	3.905946e-14
43	8178712	8062211	NM_032194	RPF2	-0.699745	1.001975e-16	1.736122e-12	4.037492e-14
44	8178712	8045332	ENST00000458407		0.699656	1.014687e-16	1.758149e-12	3.995793e-14
45	8178712	8114861	NM_020117	LARS	-0.699494	1.038417e-16	1.799266e-12	3.998369e-14
46	8178712	8009721	NM_014603	CDR2L	0.699472	1.041663e-16	1.804890e-12	3.923674e-14
47	8178712	8098512	NM_021942	C4orf41	-0.699049	1.106251e-16	1.916801e-12	4.078300e-14
48	8178712	7967969	NM_138284	IL17D	0.698982	1.116922e-16	1.935290e-12	4.031854e-14
49	8178712	7930482	NM_000681	ADRA2A	0.698634	1.173459e-16	2.033253e-12	4.149495e-14
50	8178712	7903239	NM_000028	AGL	-0.698509	1.194465e-16	2.069650e-12	4.139300e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation