[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7484	8025041	NM_139161	CRB3		crumbs homolog 3 (Drosophila)

Fetching correlation data, please wait...
Getting list of correlations for id 7484.
Getting list of p-values for id 7484.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.146 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8025041	8039524	NM_152600	ZNF579	0.850013	1.948585e-30	3.376313e-26	3.376313e-26
2	8025041	8005328	NM_016239	MYO15A	0.847902	3.783047e-30	6.554885e-26	3.277443e-26
3	8025041	8074131	NM_001080420	SHANK3	0.836219	1.250610e-28	2.166933e-24	7.223109e-25
4	8025041	8032088	NM_214710	PRSSL1	0.835360	1.599878e-28	2.772108e-24	6.930270e-25
5	8025041	8158554	NM_016307	PRRX2	0.833808	2.487579e-28	4.310228e-24	8.620457e-25
6	8025041	7952893	BC024764	IQSEC3	0.828869	9.839499e-28	1.704890e-23	2.841483e-24
7	8025041	8159670	NM_006647	NOXA1	0.827680	1.360856e-27	2.357955e-23	3.368507e-24
8	8025041	8121209	NM_005604	POU3F2	0.826434	1.907168e-27	3.304550e-23	4.130687e-24
9	8025041	7911376	NM_001142467	HES4	0.826384	1.933280e-27	3.349794e-23	3.721993e-24
10	8025041	7949015	NM_001144936	C11orf95	0.825265	2.611025e-27	4.524122e-23	4.524122e-24
11	8025041	8071276	NM_080647	TBX1	0.824696	3.039624e-27	5.266757e-23	4.787960e-24
12	8025041	7947928	NM_031909	C1QTNF4	0.823843	3.814202e-27	6.608867e-23	5.507389e-24
13	8025041	7896761	NM_152486	SAMD11	0.820621	8.890394e-27	1.540439e-22	1.184953e-23
14	8025041	8155942	NM_001013735	FOXB2	0.819063	1.330371e-26	2.305135e-22	1.646525e-23
15	8025041	7928291	NM_004273	CHST3	0.818931	1.376184e-26	2.384514e-22	1.589676e-23
16	8025041	7978093	NM_032452	JPH4	0.818387	1.582520e-26	2.742033e-22	1.713771e-23
17	8025041	8116582	NM_001452	FOXF2	0.818273	1.629668e-26	2.823725e-22	1.661015e-23
18	8025041	8064676	NM_145762	GFRA4	0.817942	1.773925e-26	3.073679e-22	1.707600e-23
19	8025041	7958577	NM_032829	C12orf34	0.817686	1.893575e-26	3.280998e-22	1.726841e-23
20	8025041	8036252	NM_015526	CLIP3	0.817523	1.974274e-26	3.420824e-22	1.710412e-23
21	8025041	8060505	NM_001110514	EBF4	0.816917	2.303259e-26	3.990857e-22	1.900408e-23
22	8025041	8037563	NM_006663	PPP1R13L	0.814948	3.787738e-26	6.563014e-22	2.983188e-23
23	8025041	7923372	NM_012396	PHLDA3	0.814244	4.518394e-26	7.829020e-22	3.403922e-23
24	8025041	8064242	NR_027686	NCRNA00176	0.812549	6.888772e-26	1.193617e-21	4.973406e-23
25	8025041	8030721	NM_002975	CLEC11A	0.811705	8.484218e-26	1.470060e-21	5.880242e-23
26	8025041	8156743	NM_004473	FOXE1	0.810950	1.021477e-25	1.769913e-21	6.807357e-23
27	8025041	8098740	NM_033178	DUX4	0.810610	1.110221e-25	1.923681e-21	7.124743e-23
28	8025041	8059014	NM_017521	FEV	0.810324	1.190724e-25	2.063168e-21	7.368458e-23
29	8025041	8133704	NM_001110199	SRRM3	0.809918	1.314581e-25	2.277775e-21	7.854397e-23
30	8025041	7897179	NM_001126240	TP73	0.809526	1.446192e-25	2.505816e-21	8.352721e-23
31	8025041	8104122	NM_033178	DUX4	0.808765	1.739383e-25	3.013829e-21	9.722029e-23
32	8025041	8093826	NM_000683	ADRA2C	0.808545	1.834561e-25	3.178743e-21	9.933573e-23
33	8025041	8032034	NM_001136263	C2CD4C	0.808339	1.928173e-25	3.340945e-21	1.012408e-22
34	8025041	7985920	NM_001039958	MESP2	0.807924	2.130878e-25	3.692172e-21	1.085933e-22
35	8025041	8046276	NM_001003845	SP5	0.807753	2.220249e-25	3.847026e-21	1.099150e-22
36	8025041	7979876	ENST00000413777		0.807361	2.440048e-25	4.227871e-21	1.174409e-22
37	8025041	8027222	NM_153221	CILP2	0.806852	2.756400e-25	4.776014e-21	1.290815e-22
38	8025041	8039362	NM_178837	C19orf51	0.806764	2.815055e-25	4.877646e-21	1.283591e-22
39	8025041	7991459	NM_020211	RGMA	0.806705	2.854758e-25	4.946439e-21	1.268318e-22
40	8025041	8098732	NM_033178	DUX4	0.805873	3.481660e-25	6.032671e-21	1.508168e-22
41	8025041	8153704	NM_031309	SCRT1	0.805444	3.855766e-25	6.680886e-21	1.629484e-22
42	8025041	8143941	NM_198285	WDR86	0.804823	4.467207e-25	7.740330e-21	1.842936e-22
43	8025041	7940022	NM_178570	RTN4RL2	0.804061	5.347131e-25	9.264973e-21	2.154645e-22
44	8025041	8032094	NM_024888	LPPR3	0.803603	5.954787e-25	1.031786e-20	2.344968e-22
45	8025041	7897006	NM_006983	MMP23B	0.802316	8.047169e-25	1.394333e-20	3.098518e-22
46	8025041	7998668	NM_144603	NOXO1	0.802113	8.438209e-25	1.462089e-20	3.178453e-22
47	8025041	8032197	NM_152769	C19orf26	0.802060	8.542691e-25	1.480192e-20	3.149345e-22
48	8025041	8048460	NM_003936	CDK5R2	0.801927	8.811787e-25	1.526818e-20	3.180871e-22
49	8025041	8014969	NM_152219	GJD3	0.800738	1.160773e-24	2.011271e-20	4.104634e-22
50	8025041	8013112	NM_016084	RASD1	0.800507	1.224365e-24	2.121457e-20	4.242914e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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