[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3370	8067394	NM_007232	HRH3		histamine receptor H3

Fetching correlation data, please wait...
Getting list of correlations for id 3370.
Getting list of p-values for id 3370.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8067394	8052018	NM_022055	KCNK12	0.804369	4.972281e-25	8.615471e-21	8.615471e-21
2	8067394	7952243	NM_015645	C1QTNF5	0.796448	3.091216e-24	5.356150e-20	2.678075e-20
3	8067394	7992758	NM_172229	KREMEN2	0.794832	4.442691e-24	7.697850e-20	2.565950e-20
4	8067394	7979876	ENST00000413777		0.790103	1.261353e-23	2.185547e-19	5.463868e-20
5	8067394	8007115	NM_001146041	KRTAP4-9	0.789668	1.386640e-23	2.402631e-19	4.805262e-20
6	8067394	8039504	NM_001145176	SHISA7	0.788139	1.930538e-23	3.345043e-19	5.575072e-20
7	8067394	8074558	NM_023004	RTN4R	0.787698	2.122526e-23	3.677701e-19	5.253858e-20
8	8067394	7991459	NM_020211	RGMA	0.779144	1.281550e-22	2.220542e-18	2.775677e-19
9	8067394	8110382	NM_030567	PRR7	0.776722	2.101349e-22	3.641008e-18	4.045564e-19
10	8067394	8048460	NM_003936	CDK5R2	0.776072	2.396838e-22	4.153000e-18	4.153000e-19
11	8067394	8074131	NM_001080420	SHANK3	0.774456	3.319380e-22	5.751490e-18	5.228628e-19
12	8067394	8171867	NM_139058	ARX	0.773802	3.783613e-22	6.555866e-18	5.463222e-19
13	8067394	8162472	NM_021570	BARX1	0.773657	3.895114e-22	6.749065e-18	5.191588e-19
14	8067394	8159491	NM_000606	C8G	0.772999	4.440785e-22	7.694549e-18	5.496106e-19
15	8067394	8071276	NM_080647	TBX1	0.772298	5.104167e-22	8.843990e-18	5.895993e-19
16	8067394	7937433	NM_000797	DRD4	0.772119	5.288545e-22	9.163462e-18	5.727164e-19
17	8067394	8060604	NM_000915	OXT	0.771617	5.841923e-22	1.012230e-17	5.954294e-19
18	8067394	8049567	NM_005855	RAMP1	0.771595	5.866461e-22	1.016482e-17	5.647120e-19
19	8067394	8159670	NM_006647	NOXA1	0.771372	6.130801e-22	1.062284e-17	5.590968e-19
20	8067394	8074070	NM_017584	MIOX	0.771298	6.220972e-22	1.077908e-17	5.389539e-19
21	8067394	8161265	NM_001007563	IGFBPL1	0.771183	6.363692e-22	1.102637e-17	5.250652e-19
22	8067394	8131087	NM_001080461	UNCX	0.770794	6.871812e-22	1.190679e-17	5.412177e-19
23	8067394	7940022	NM_178570	RTN4RL2	0.770636	7.088980e-22	1.228308e-17	5.340468e-19
24	8067394	8030015	NM_012451	SYNGR4	0.770321	7.541059e-22	1.306639e-17	5.444331e-19
25	8067394	8151125	ENST00000340798		0.770185	7.744926e-22	1.341963e-17	5.367853e-19
26	8067394	7929840	NM_003987	PAX2	0.770011	8.013863e-22	1.388562e-17	5.340623e-19
27	8067394	8024605	NM_021938	CELF5	0.769829	8.305445e-22	1.439084e-17	5.329942e-19
28	8067394	8121209	NM_005604	POU3F2	0.769248	9.304491e-22	1.612189e-17	5.757819e-19
29	8067394	8013112	NM_016084	RASD1	0.769163	9.460660e-22	1.639249e-17	5.652581e-19
30	8067394	8067798	NM_018419	SOX18	0.768793	1.016782e-21	1.761777e-17	5.872592e-19
31	8067394	8073449	NM_014460	CSDC2	0.767744	1.246767e-21	2.160274e-17	6.968626e-19
32	8067394	8027222	NM_153221	CILP2	0.767741	1.247612e-21	2.161737e-17	6.755429e-19
33	8067394	7998015	NM_032451	SPIRE2	0.764484	2.333809e-21	4.043791e-17	1.225391e-18
34	8067394	8031084	NM_031895	CACNG8	0.763697	2.710826e-21	4.697048e-17	1.381485e-18
35	8067394	7911750	NM_001010926	HES5	0.763315	2.915142e-21	5.051067e-17	1.443162e-18
36	8067394	8064242	NR_027686	NCRNA00176	0.763271	2.939642e-21	5.093518e-17	1.414866e-18
37	8067394	8004842	NM_173728	ARHGEF15	0.762927	3.137302e-21	5.436002e-17	1.469190e-18
38	8067394	8062948	NM_014276	RBPJL	0.762528	3.383481e-21	5.862557e-17	1.542778e-18
39	8067394	7947928	NM_031909	C1QTNF4	0.762477	3.415898e-21	5.918726e-17	1.517622e-18
40	8067394	8064676	NM_145762	GFRA4	0.762283	3.543259e-21	6.139405e-17	1.534851e-18
41	8067394	8153862	NM_001024678	LRRC24	0.760747	4.729803e-21	8.195329e-17	1.998861e-18
42	8067394	8087234	NM_006321	ARIH2	0.760695	4.776054e-21	8.275468e-17	1.970350e-18
43	8067394	8061940	DQ080434	C20orf144	0.760639	4.826162e-21	8.362291e-17	1.944719e-18
44	8067394	8158554	NM_016307	PRRX2	0.760604	4.858047e-21	8.417537e-17	1.913077e-18
45	8067394	8004763	NM_000180	GUCY2D	0.759831	5.612779e-21	9.725262e-17	2.161169e-18
46	8067394	8030842	hsa-mir-99b		0.759054	6.485920e-21	1.123815e-16	2.443077e-18
47	8067394	7897006	NM_006983	MMP23B	0.758059	7.798143e-21	1.351184e-16	2.874860e-18
48	8067394	8093807	NM_173660	DOK7	0.757833	8.131785e-21	1.408994e-16	2.935405e-18
49	8067394	8093826	NM_000683	ADRA2C	0.757519	8.616069e-21	1.492906e-16	3.046748e-18
50	8067394	8010696	NM_148896	NPB	0.757048	9.397061e-21	1.628229e-16	3.256458e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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