[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12793	7934367	NM_004034	ANXA7		annexin A7

Fetching correlation data, please wait...
Getting list of correlations for id 12793.
Getting list of p-values for id 12793.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.144 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7934367	8095048	NM_030917	FIP1L1	0.846856	5.236580e-30	9.073422e-26	9.073422e-26
2	7934367	8042335	NM_003375	VDAC2	0.842871	1.766970e-29	3.061629e-25	1.530814e-25
3	7934367	7913450	NM_005529	HSPG2	-0.839545	4.752807e-29	8.235188e-25	2.745063e-25
4	7934367	8147172	NM_003909	CPNE3	0.837241	9.311310e-29	1.613371e-24	4.033427e-25
5	7934367	8178322	NM_006937	SUMO2	0.835087	1.729459e-28	2.996633e-24	5.993266e-25
6	7934367	8110169	NM_014613	FAF2	0.833943	2.394351e-28	4.148693e-24	6.914488e-25
7	7934367	7942553	NM_014752	SPCS2	0.832614	3.482180e-28	6.033573e-24	8.619389e-25
8	7934367	8139421	NM_012412	H2AFV	0.830524	6.236558e-28	1.080608e-23	1.350760e-24
9	7934367	8110894	NM_017755	NSUN2	0.830107	6.999256e-28	1.212761e-23	1.347512e-24
10	7934367	8115168	NM_018047	RBM22	0.829299	8.743954e-28	1.515065e-23	1.515065e-24
11	7934367	8049509	NM_015893	PRLH	-0.828432	1.108931e-27	1.921445e-23	1.746768e-24
12	7934367	8091048	NR_023350	COPB2	0.827913	1.277526e-27	2.213570e-23	1.844641e-24
13	7934367	7937560	NM_002457	MUC2	-0.824226	3.445508e-27	5.970032e-23	4.592333e-24
14	7934367	7936762	NM_001001976	ATE1	0.823960	3.697357e-27	6.406410e-23	4.576007e-24
15	7934367	7927367	NM_001040084	ANXA8	-0.822288	5.749540e-27	9.962228e-23	6.641485e-24
16	7934367	7978718	NM_006364	SEC23A	0.821308	7.433032e-27	1.287921e-22	8.049509e-24
17	7934367	8132070	NM_002047	GARS	0.820072	1.025233e-26	1.776421e-22	1.044954e-23
18	7934367	7914180	NM_014752	SPCS2	0.819463	1.199943e-26	2.079141e-22	1.155079e-23
19	7934367	8090490	NM_002950	RPN1	0.817350	2.063274e-26	3.575035e-22	1.881598e-23
20	7934367	8060126	NM_198998	AQP12A	-0.816050	2.869391e-26	4.971793e-22	2.485897e-23
21	7934367	7913300	NM_016287	HP1BP3	0.815696	3.137633e-26	5.436576e-22	2.588846e-23
22	7934367	8110821	NM_001044	SLC6A3	-0.815586	3.226030e-26	5.589743e-22	2.540792e-23
23	7934367	8067409	NM_005560	LAMA5	-0.814687	4.044602e-26	7.008083e-22	3.046992e-23
24	7934367	8003758	NM_000430	PAFAH1B1	0.813892	4.934509e-26	8.550023e-22	3.562510e-23
25	7934367	8018315	NM_006937	SUMO2	0.813875	4.954543e-26	8.584736e-22	3.433895e-23
26	7934367	8083282	NM_032383	HPS3	0.812362	7.215293e-26	1.250194e-21	4.808438e-23
27	7934367	8001149	NM_018206	VPS35	0.812186	7.535189e-26	1.305622e-21	4.835637e-23
28	7934367	8039362	NM_178837	C19orf51	-0.811794	8.301048e-26	1.438323e-21	5.136866e-23
29	7934367	8013384	NM_000691	ALDH3A1	-0.811768	8.353483e-26	1.447408e-21	4.991062e-23
30	7934367	8067011	NM_015339	ADNP	0.811170	9.677728e-26	1.676860e-21	5.589533e-23
31	7934367	8046922	NM_000090	COL3A1	-0.811139	9.752223e-26	1.689768e-21	5.450863e-23
32	7934367	7944285	NM_001655	ARCN1	0.810000	1.288511e-25	2.232603e-21	6.976884e-23
33	7934367	8036072	NM_207392	KRTDAP	-0.809986	1.292828e-25	2.240083e-21	6.788131e-23
34	7934367	8050565	NM_015317	PUM2	0.809062	1.618698e-25	2.804718e-21	8.249172e-23
35	7934367	7927307	NM_001630	ANXA8L2	-0.808784	1.731470e-25	3.000118e-21	8.571766e-23
36	7934367	8023228	NM_017653	DYM	0.806944	2.696068e-25	4.671477e-21	1.297632e-22
37	7934367	7980463	NM_012245	SNW1	0.806741	2.830409e-25	4.904249e-21	1.325473e-22
38	7934367	8093112	NM_015562	UBXN7	0.806231	3.197425e-25	5.540177e-21	1.457941e-22
39	7934367	8159036	NM_139025	ADAMTS13	-0.806078	3.315831e-25	5.745340e-21	1.473164e-22
40	7934367	8096556	NM_015143	METAP1	0.805680	3.645267e-25	6.316155e-21	1.579039e-22
41	7934367	7936614	NM_003750	EIF3A	0.805044	4.239229e-25	7.345312e-21	1.791540e-22
42	7934367	8005512	NM_002767	PRPSAP2	0.804907	4.379169e-25	7.587787e-21	1.806616e-22
43	7934367	7900352	NM_022120	OXCT2	-0.804839	4.450164e-25	7.710800e-21	1.793209e-22
44	7934367	7915257	NM_022120	OXCT2	-0.804839	4.450164e-25	7.710800e-21	1.752455e-22
45	7934367	8047641	NM_177538	CYP20A1	0.804306	5.047388e-25	8.745608e-21	1.943469e-22
46	7934367	8005879	NR_027384	SLC13A2	-0.804212	5.160113e-25	8.940928e-21	1.943680e-22
47	7934367	7976189	NM_002802	PSMC1	0.803890	5.566495e-25	9.645066e-21	2.052142e-22
48	7934367	8049016	NM_002807	PSMD1	0.803625	5.924593e-25	1.026554e-20	2.138655e-22
49	7934367	8024754	NM_032607	CREB3L3	-0.803340	6.333814e-25	1.097460e-20	2.239714e-22
50	7934367	8132580	NM_006555	YKT6	0.802489	7.730062e-25	1.339388e-20	2.678776e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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