[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
10267	8110169	NM_014613	FAF2		Fas associated factor family member 2

Fetching correlation data, please wait...
Getting list of correlations for id 10267.
Getting list of p-values for id 10267.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.146 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8110169	8115168	NM_018047	RBM22	0.888073	1.513888e-36	2.623114e-32	2.623114e-32
2	8110169	7944285	NM_001655	ARCN1	0.868501	3.637222e-33	6.302215e-29	3.151108e-29
3	8110169	8133504	NM_032999	GTF2I	0.868123	4.175068e-33	7.234140e-29	2.411380e-29
4	8110169	8132070	NM_002047	GARS	0.865667	1.011877e-32	1.753279e-28	4.383198e-29
5	8110169	8083282	NM_032383	HPS3	0.865185	1.201484e-32	2.081812e-28	4.163623e-29
6	8110169	8066668	NM_020967	NCOA5	0.863930	1.872600e-32	3.244654e-28	5.407756e-29
7	8110169	7936614	NM_003750	EIF3A	0.860694	5.766757e-32	9.992060e-28	1.427437e-28
8	8110169	8009382	NM_004459	BPTF	0.853386	6.607046e-31	1.144803e-26	1.431004e-27
9	8110169	8163275	NM_001080398	KIAA0368	0.852603	8.515322e-31	1.475450e-26	1.639389e-27
10	8110169	7980463	NM_012245	SNW1	0.851365	1.267225e-30	2.195721e-26	2.195721e-27
11	8110169	7915882	NM_014774	KIAA0494	0.849694	2.155827e-30	3.735401e-26	3.395819e-27
12	8110169	7978718	NM_006364	SEC23A	0.848983	2.697031e-30	4.673145e-26	3.894288e-27
13	8110169	8081465	NM_001142568	BBX	0.848965	2.712508e-30	4.699963e-26	3.615356e-27
14	8110169	7987325	NM_014691	AQR	0.843671	1.387956e-29	2.404912e-25	1.717794e-26
15	8110169	7980523	NM_015859	GTF2A1	0.841722	2.493203e-29	4.319972e-25	2.879982e-26
16	8110169	8077458	NM_014674	EDEM1	0.839922	4.253172e-29	7.369472e-25	4.605920e-26
17	8110169	8001693	NM_016284	CNOT1	0.838988	5.597537e-29	9.698853e-25	5.705208e-26
18	8110169	7999562	NM_002582	PARN	0.838831	5.861535e-29	1.015628e-24	5.642378e-26
19	8110169	8087951	NM_018165	PBRM1	0.837516	8.598265e-29	1.489821e-24	7.841165e-26
20	8110169	8091048	NR_023350	COPB2	0.837011	9.950661e-29	1.724151e-24	8.620756e-26
21	8110169	7930956	NM_007190	SEC23IP	0.835838	1.395032e-28	2.417173e-24	1.151035e-25
22	8110169	8164607	NM_015033	FNBP1	0.835405	1.579103e-28	2.736112e-24	1.243687e-25
23	8110169	8160622	NM_018225	SMU1	0.834605	1.983755e-28	3.437253e-24	1.494458e-25
24	8110169	7934367	NM_004034	ANXA7	0.833943	2.394351e-28	4.148693e-24	1.728622e-25
25	8110169	8018922	NM_004762	CYTH1	0.833842	2.463819e-28	4.269060e-24	1.707624e-25
26	8110169	8006850	NM_016507	CDK12	0.833602	2.636326e-28	4.567963e-24	1.756909e-25
27	8110169	8040618	NM_016131	RAB10	0.833552	2.674201e-28	4.633587e-24	1.716143e-25
28	8110169	7975344	NM_018375	SLC39A9	0.833515	2.702325e-28	4.682318e-24	1.672256e-25
29	8110169	7913300	NM_016287	HP1BP3	0.833185	2.965794e-28	5.138832e-24	1.772011e-25
30	8110169	7984641	NM_005744	ARIH1	0.832934	3.183135e-28	5.515418e-24	1.838473e-25
31	8110169	7916045	NM_001981	EPS15	0.832793	3.311659e-28	5.738112e-24	1.851004e-25
32	8110169	7898833	NM_001009999	KDM1A	0.832562	3.534284e-28	6.123855e-24	1.913705e-25
33	8110169	8100251	NM_015030	FRYL	0.832371	3.728460e-28	6.460302e-24	1.957667e-25
34	8110169	8101324	NM_031370	HNRNPD	0.831896	4.257875e-28	7.377621e-24	2.169888e-25
35	8110169	7914180	NM_014752	SPCS2	0.831598	4.627794e-28	8.018579e-24	2.291023e-25
36	8110169	8049199	NM_001103147	GIGYF2	0.831353	4.954367e-28	8.584432e-24	2.384564e-25
37	8110169	8023228	NM_017653	DYM	0.830786	5.800875e-28	1.005118e-23	2.716534e-25
38	8110169	7914296	NM_001020658	PUM1	0.830427	6.407479e-28	1.110224e-23	2.921642e-25
39	8110169	7927889	NM_018237	CCAR1	0.830058	7.095621e-28	1.229458e-23	3.152457e-25
40	8110169	7967287	NM_017612	ZCCHC8	0.829908	7.395487e-28	1.281416e-23	3.203540e-25
41	8110169	8001149	NM_018206	VPS35	0.829793	7.633190e-28	1.322603e-23	3.225860e-25
42	8110169	8017776	NM_014877	HELZ	0.829519	8.231652e-28	1.426298e-23	3.395949e-25
43	8110169	8061815	NM_182658	C20orf185	-0.828668	1.039440e-27	1.801038e-23	4.188461e-25
44	8110169	8080645	NM_012096	APPL1	0.826985	1.643385e-27	2.847493e-23	6.471575e-25
45	8110169	7901447	NM_032864	PRPF38A	0.826678	1.785799e-27	3.094254e-23	6.876119e-25
46	8110169	8116622	NM_003804	RIPK1	0.826166	2.049929e-27	3.551912e-23	7.721547e-25
47	8110169	8157700	NM_012197	RABGAP1	0.825714	2.315103e-27	4.011379e-23	8.534848e-25
48	8110169	7955019	NM_152641	ARID2	0.825204	2.654097e-27	4.598754e-23	9.580737e-25
49	8110169	7945132	NM_002017	FLI1	0.825098	2.730008e-27	4.730285e-23	9.653642e-25
50	8110169	7972190	NM_022118	RBM26	0.824982	2.816283e-27	4.879773e-23	9.759546e-25

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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