Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14324	7944285	NM_001655	ARCN1		archain 1

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7944285	7978718	NM_006364	SEC23A		0.939417	1.064376e-49	1.844244e-45	1.844244e-45
2	7944285	7984641	NM_005744	ARIH1		0.928731	3.480598e-46	6.030832e-42	3.015416e-42
3	7944285	8023195	NM_005901	SMAD2		0.922999	1.614423e-44	2.797310e-40	9.324368e-41
4	7944285	8163275	NM_001080398	KIAA0368		0.921704	3.686353e-44	6.387343e-40	1.596836e-40
5	7944285	8100251	NM_015030	FRYL		0.918905	2.092947e-43	3.626450e-39	7.252900e-40
6	7944285	7929168	NM_025235	TNKS2		0.918867	2.141995e-43	3.711435e-39	6.185725e-40
7	7944285	7980463	NM_012245	SNW1		0.918348	2.935173e-43	5.085773e-39	7.265391e-40
8	7944285	8152148	NM_015902	UBR5		0.918070	3.473373e-43	6.018314e-39	7.522892e-40
9	7944285	8091048	NR_023350	COPB2		0.916155	1.086583e-42	1.882723e-38	2.091914e-39
10	7944285	7930956	NM_007190	SEC23IP		0.913926	3.962040e-42	6.865026e-38	6.865026e-39
11	7944285	8083282	NM_032383	HPS3		0.911623	1.453414e-41	2.518331e-37	2.289391e-38
12	7944285	8087951	NM_018165	PBRM1		0.910244	3.113495e-41	5.394753e-37	4.495627e-38
13	7944285	8164607	NM_015033	FNBP1		0.908679	7.282415e-41	1.261824e-36	9.706339e-38
14	7944285	8126018	NM_007271	STK38		0.907903	1.103884e-40	1.912699e-36	1.366214e-37
15	7944285	8101324	NM_031370	HNRNPD		0.907435	1.415416e-40	2.452491e-36	1.634994e-37
16	7944285	7936614	NM_003750	EIF3A		0.907142	1.652794e-40	2.863796e-36	1.789873e-37
17	7944285	8045090	NM_020120	UGGT1		0.907109	1.681973e-40	2.914354e-36	1.714326e-37
18	7944285	8132070	NM_002047	GARS		0.905135	4.719219e-40	8.176991e-36	4.542773e-37
19	7944285	7903294	NM_033055	HIAT1		0.904299	7.258949e-40	1.257758e-35	6.619780e-37
20	7944285	8003758	NM_000430	PAFAH1B1		0.904013	8.400940e-40	1.455631e-35	7.278154e-37
21	7944285	8008834	NM_004859	CLTC		0.903198	1.271245e-39	2.202687e-35	1.048898e-36
22	7944285	7988581	NM_014701	SECISBP2L		0.902971	1.425433e-39	2.469848e-35	1.122658e-36
23	7944285	8001693	NM_016284	CNOT1		0.902101	2.207602e-39	3.825113e-35	1.663092e-36
24	7944285	8061986	NM_031483	ITCH		0.902007	2.313552e-39	4.008691e-35	1.670288e-36
25	7944285	8163882	NM_016322	RAB14		0.901515	2.955612e-39	5.121188e-35	2.048475e-36
26	7944285	7907790	NM_014810	CEP350		0.901102	3.628782e-39	6.287590e-35	2.418304e-36
27	7944285	8001211	NM_030790	ITFG1		0.900996	3.822405e-39	6.623081e-35	2.452993e-36
28	7944285	7943176	NM_004268	MED17		0.899475	8.058192e-39	1.396243e-34	4.986582e-36
29	7944285	8062880	NM_003404	YWHAB		0.899448	8.165105e-39	1.414768e-34	4.878509e-36
30	7944285	7931728	NM_015155	LARP4B		0.898695	1.175840e-38	2.037379e-34	6.791262e-36
31	7944285	7903519	NM_018061	PRPF38B		0.897902	1.720649e-38	2.981368e-34	9.617316e-36
32	7944285	7942626	NM_003369	UVRAG		0.896266	3.739193e-38	6.478899e-34	2.024656e-35
33	7944285	8094704	NM_005339	UBE2K		0.896230	3.802577e-38	6.588725e-34	1.996583e-35
34	7944285	7989253	NM_024755	SLTM		0.895497	5.360296e-38	9.287785e-34	2.731701e-35
35	7944285	8095163	NM_001024924	EXOC1		0.895241	6.039844e-38	1.046524e-33	2.990068e-35
36	7944285	7967420	NM_018183	SBNO1		0.894541	8.357048e-38	1.448026e-33	4.022294e-35
37	7944285	7971422	NM_015070	ZC3H13		0.894158	9.972613e-38	1.727955e-33	4.670148e-35
38	7944285	8058428	NM_005006	NDUFS1		0.893791	1.180789e-37	2.045954e-33	5.384089e-35
39	7944285	8052443	NM_014709	USP34		0.893435	1.389814e-37	2.408130e-33	6.174693e-35
40	7944285	7985166	NM_004136	IREB2		0.892612	2.021673e-37	3.502953e-33	8.757383e-35
41	7944285	8160622	NM_018225	SMU1		0.892479	2.147391e-37	3.720784e-33	9.075083e-35
42	7944285	8006638	NM_024835	GGNBP2		0.892291	2.337135e-37	4.049553e-33	9.641794e-35
43	7944285	8001149	NM_018206	VPS35		0.892207	2.427780e-37	4.206615e-33	9.782824e-35
44	7944285	8148333	NM_015137	EFR3A		0.892187	2.449919e-37	4.244974e-33	9.647668e-35
45	7944285	8068289	NM_138927	SON		0.892182	2.455627e-37	4.254864e-33	9.455254e-35
46	7944285	7975521	NM_021239	RBM25		0.891496	3.343107e-37	5.792601e-33	1.259261e-34
47	7944285	8171762	NM_004586	RPS6KA3		0.891413	3.470872e-37	6.013979e-33	1.279570e-34
48	7944285	8082607	NM_014382	ATP2C1		0.891113	3.969702e-37	6.878303e-33	1.432980e-34
49	7944285	8157700	NM_012197	RABGAP1		0.890477	5.268544e-37	9.128806e-33	1.863022e-34
50	7944285	7987325	NM_014691	AQR		0.890473	5.278835e-37	9.146637e-33	1.829327e-34

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.