Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16075	7936614	NM_003750	EIF3A		eukaryotic translation initiation factor 3, subunit A

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7936614	7914791	NM_005066	SFPQ		0.920479	7.946698e-44	1.376924e-39	1.376924e-39
2	7936614	8087951	NM_018165	PBRM1		0.918352	2.929239e-43	5.075493e-39	2.537746e-39
3	7936614	7930956	NM_007190	SEC23IP		0.908099	9.940618e-41	1.722411e-36	5.741369e-37
4	7936614	7944285	NM_001655	ARCN1		0.907142	1.652794e-40	2.863796e-36	7.159491e-37
5	7936614	7999326	NM_003470	USP7		0.903604	1.034567e-39	1.792593e-35	3.585187e-36
6	7936614	8163275	NM_001080398	KIAA0368		0.901233	3.399958e-39	5.891107e-35	9.818512e-36
7	7936614	8062492	NM_020336	RALGAPB		0.896614	3.173651e-38	5.498985e-34	7.855693e-35
8	7936614	8132070	NM_002047	GARS		0.896056	4.126669e-38	7.150280e-34	8.937850e-35
9	7936614	7989128	NM_144571	CNOT6L		0.895414	5.571807e-38	9.654269e-34	1.072697e-34
10	7936614	7967420	NM_018183	SBNO1		0.895277	5.939880e-38	1.029203e-33	1.029203e-34
11	7936614	8017776	NM_014877	HELZ		0.894919	7.014912e-38	1.215474e-33	1.104976e-34
12	7936614	7913300	NM_016287	HP1BP3		0.894666	7.887630e-38	1.366690e-33	1.138908e-34
13	7936614	8083282	NM_032383	HPS3		0.893746	1.205098e-37	2.088074e-33	1.606211e-34
14	7936614	8052443	NM_014709	USP34		0.893703	1.229475e-37	2.130311e-33	1.521650e-34
15	7936614	8091048	NR_023350	COPB2		0.893454	1.377715e-37	2.387167e-33	1.591445e-34
16	7936614	8001693	NM_016284	CNOT1		0.891986	2.682471e-37	4.647918e-33	2.904949e-34
17	7936614	8171762	NM_004586	RPS6KA3		0.891305	3.642938e-37	6.312118e-33	3.713011e-34
18	7936614	8110522	NM_001746	CANX		0.890180	6.010179e-37	1.041384e-32	5.785465e-34
19	7936614	8160622	NM_018225	SMU1		0.889662	7.555348e-37	1.309115e-32	6.890080e-34
20	7936614	7907790	NM_014810	CEP350		0.889349	8.673145e-37	1.502796e-32	7.513979e-34
21	7936614	7999841	NM_015092	SMG1		0.888890	1.060176e-36	1.836967e-32	8.747460e-34
22	7936614	7955019	NM_152641	ARID2		0.888677	1.163770e-36	2.016465e-32	9.165748e-34
23	7936614	8095269	NM_000938	POLR2B		0.888478	1.269345e-36	2.199395e-32	9.562585e-34
24	7936614	7916045	NM_001981	EPS15		0.888374	1.327973e-36	2.300979e-32	9.587412e-34
25	7936614	8059689	NM_005381	NCL		0.887482	1.954407e-36	3.386401e-32	1.354560e-33
26	7936614	8103106	NM_006726	LRBA		0.887137	2.268442e-36	3.930529e-32	1.511742e-33
27	7936614	8100251	NM_015030	FRYL		0.887080	2.324383e-36	4.027459e-32	1.491651e-33
28	7936614	7971422	NM_015070	ZC3H13		0.886279	3.275918e-36	5.676182e-32	2.027208e-33
29	7936614	7924351	NM_004446	EPRS		0.886174	3.425175e-36	5.934800e-32	2.046483e-33
30	7936614	8138670	NM_031243	HNRNPA2B1		0.885601	4.370812e-36	7.573306e-32	2.524435e-33
31	7936614	7925978	NM_017782	C10orf18		0.885217	5.140772e-36	8.907416e-32	2.873360e-33
32	7936614	8108134	NM_014829	DDX46		0.885189	5.201642e-36	9.012885e-32	2.816527e-33
33	7936614	8151842	NM_015496	KIAA1429		0.884612	6.633271e-36	1.149347e-31	3.482869e-33
34	7936614	8134180	NM_019004	ANKIB1		0.883907	8.911622e-36	1.544117e-31	4.541520e-33
35	7936614	7972069	NM_015057	MYCBP2		0.882422	1.649378e-35	2.857877e-31	8.165362e-33
36	7936614	7987325	NM_014691	AQR		0.881633	2.280184e-35	3.950875e-31	1.097465e-32
37	7936614	7978449	NM_015382	HECTD1		0.880858	3.126966e-35	5.418094e-31	1.464350e-32
38	7936614	8003758	NM_000430	PAFAH1B1		0.880211	4.062493e-35	7.039082e-31	1.852390e-32
39	7936614	7989253	NM_024755	SLTM		0.879971	4.475735e-35	7.755105e-31	1.988489e-32
40	7936614	8105778	NM_181523	PIK3R1		0.879661	5.069576e-35	8.784054e-31	2.196014e-32
41	7936614	7917156	NM_003902	FUBP1		0.878891	6.899644e-35	1.195501e-30	2.915857e-32
42	7936614	7916443	NM_015306	USP24		0.878670	7.536034e-35	1.305769e-30	3.108973e-32
43	7936614	7984641	NM_005744	ARIH1		0.878607	7.727552e-35	1.338953e-30	3.113844e-32
44	7936614	7989387	NM_020821	VPS13C		0.877797	1.065246e-34	1.845752e-30	4.194891e-32
45	7936614	8152148	NM_015902	UBR5		0.877218	1.338562e-34	2.319326e-30	5.154058e-32
46	7936614	8154531	NM_017925	DENND4C		0.876665	1.662606e-34	2.880797e-30	6.262602e-32
47	7936614	8041283	NM_016252	BIRC6		0.876201	1.992934e-34	3.453156e-30	7.347141e-32
48	7936614	8096556	NM_015143	METAP1		0.875939	2.206221e-34	3.822719e-30	7.963998e-32
49	7936614	8092849	NM_024524	ATP13A3		0.875597	2.519959e-34	4.366333e-30	8.910884e-32
50	7936614	8098512	NM_021942	C4orf41		0.875469	2.647731e-34	4.587724e-30	9.175448e-32

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.