Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
11570	8132070	NM_002047	GARS		glycyl-tRNA synthetase

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8132070	7944285	NM_001655	ARCN1		0.905135	4.719219e-40	8.176991e-36	8.176991e-36
2	8132070	7924351	NM_004446	EPRS		0.901738	2.645514e-39	4.583882e-35	2.291941e-35
3	8132070	8066668	NM_020967	NCOA5		0.899085	9.737487e-39	1.687214e-34	5.624048e-35
4	8132070	8135576	NM_015641	TES		0.898980	1.024283e-38	1.774776e-34	4.436939e-35
5	8132070	7930956	NM_007190	SEC23IP		0.898264	1.446949e-38	2.507129e-34	5.014257e-35
6	8132070	8018315	NM_006937	SUMO2		0.896978	2.672303e-38	4.630299e-34	7.717165e-35
7	8132070	7936614	NM_003750	EIF3A		0.896056	4.126669e-38	7.150280e-34	1.021469e-34
8	8132070	8178322	NM_006937	SUMO2		0.895443	5.498516e-38	9.527279e-34	1.190910e-34
9	8132070	7934852	NM_005271	GLUD1		0.895341	5.764706e-38	9.988505e-34	1.109834e-34
10	8132070	8023195	NM_005901	SMAD2		0.894461	8.671445e-38	1.502501e-33	1.502501e-34
11	8132070	8054614	NM_022662	ANAPC1		0.894219	9.696478e-38	1.680109e-33	1.527372e-34
12	8132070	8147483	NM_178812	MTDH		0.893365	1.435043e-37	2.486499e-33	2.072082e-34
13	8132070	8083282	NM_032383	HPS3		0.891030	4.118915e-37	7.136844e-33	5.489880e-34
14	8132070	8094704	NM_005339	UBE2K		0.890884	4.396430e-37	7.617695e-33	5.441211e-34
15	8132070	8042335	NM_003375	VDAC2		0.890683	4.807278e-37	8.329570e-33	5.553047e-34
16	8132070	8103106	NM_006726	LRBA		0.890034	6.411975e-37	1.111003e-32	6.943768e-34
17	8132070	8110589	NM_015455	CNOT6		0.889191	9.294198e-37	1.610406e-32	9.472974e-34
18	8132070	8100251	NM_015030	FRYL		0.888694	1.154998e-36	2.001265e-32	1.111814e-33
19	8132070	7999562	NM_002582	PARN		0.888430	1.296057e-36	2.245677e-32	1.181935e-33
20	8132070	7931187	NM_004725	BUB3		0.887735	1.752594e-36	3.036719e-32	1.518360e-33
21	8132070	8134180	NM_019004	ANKIB1		0.886420	3.083690e-36	5.343109e-32	2.544338e-33
22	8132070	8087951	NM_018165	PBRM1		0.885841	3.946823e-36	6.838661e-32	3.108482e-33
23	8132070	7996393	NM_001755	CBFB		0.885607	4.359996e-36	7.554565e-32	3.284594e-33
24	8132070	7984641	NM_005744	ARIH1		0.885245	5.081684e-36	8.805034e-32	3.668764e-33
25	8132070	7978718	NM_006364	SEC23A		0.884363	7.363795e-36	1.275925e-31	5.103699e-33
26	8132070	8117140	NM_017774	CDKAL1		0.883971	8.676324e-36	1.503347e-31	5.782103e-33
27	8132070	8023561	NM_005570	LMAN1		0.883021	1.288175e-35	2.232022e-31	8.266747e-33
28	8132070	7987325	NM_014691	AQR		0.882854	1.380236e-35	2.391535e-31	8.541198e-33
29	8132070	8059689	NM_005381	NCL		0.882430	1.644198e-35	2.848901e-31	9.823798e-33
30	8132070	7917156	NM_003902	FUBP1		0.881970	1.985847e-35	3.440877e-31	1.146959e-32
31	8132070	8107375	NM_022828	YTHDC2		0.881194	2.727751e-35	4.726374e-31	1.524637e-32
32	8132070	7942553	NM_014752	SPCS2		0.880931	3.034597e-35	5.258046e-31	1.643139e-32
33	8132070	8001211	NM_030790	ITFG1		0.880616	3.448280e-35	5.974835e-31	1.810556e-32
34	8132070	8023228	NM_017653	DYM		0.880263	3.978116e-35	6.892881e-31	2.027318e-32
35	8132070	8096556	NM_015143	METAP1		0.879916	4.575157e-35	7.927374e-31	2.264964e-32
36	8132070	7916443	NM_015306	USP24		0.879207	6.082029e-35	1.053833e-30	2.927314e-32
37	8132070	7957008	NM_007007	CPSF6		0.879178	6.153667e-35	1.066246e-30	2.881746e-32
38	8132070	8163275	NM_001080398	KIAA0368		0.879040	6.501265e-35	1.126474e-30	2.964406e-32
39	8132070	7915882	NM_014774	KIAA0494		0.878644	7.614706e-35	1.319400e-30	3.383077e-32
40	8132070	8154531	NM_017925	DENND4C		0.877195	1.350502e-34	2.340014e-30	5.850036e-32
41	8132070	7973902	NM_003136	SRP54		0.876914	1.507817e-34	2.612594e-30	6.372180e-32
42	8132070	8073799	NM_013236	ATXN10		0.876836	1.554722e-34	2.693867e-30	6.413968e-32
43	8132070	7913300	NM_016287	HP1BP3		0.876639	1.679434e-34	2.909955e-30	6.767337e-32
44	8132070	7915130	NM_006802	SF3A3		0.876176	2.012250e-34	3.486626e-30	7.924151e-32
45	8132070	7939137	NM_006360	EIF3M		0.875806	2.324072e-34	4.026919e-30	8.948709e-32
46	8132070	8170097	NM_001042537	SLC9A6		0.875536	2.579899e-34	4.470191e-30	9.717807e-32
47	8132070	7903239	NM_000028	AGL		0.875484	2.632205e-34	4.560822e-30	9.703876e-32
48	8132070	7972190	NM_022118	RBM26		0.875361	2.760585e-34	4.783266e-30	9.965137e-32
49	8132070	8160622	NM_018225	SMU1		0.875340	2.783336e-34	4.822687e-30	9.842218e-32
50	8132070	8148333	NM_015137	EFR3A		0.875296	2.830977e-34	4.905234e-30	9.810469e-32

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.