Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12170	7978718	NM_006364	SEC23A		Sec23 homolog A (S. cerevisiae)

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7978718	7944285	NM_001655	ARCN1		0.939417	1.064376e-49	1.844244e-45	1.844244e-45
2	7978718	8152148	NM_015902	UBR5		0.926129	2.065094e-45	3.578189e-41	1.789094e-41
3	7978718	8023195	NM_005901	SMAD2		0.925282	3.634232e-45	6.297034e-41	2.099011e-41
4	7978718	7984641	NM_005744	ARIH1		0.917257	5.653456e-43	9.795744e-39	2.448936e-39
5	7978718	8100251	NM_015030	FRYL		0.916335	9.768817e-43	1.692643e-38	3.385286e-39
6	7978718	7929168	NM_025235	TNKS2		0.915080	2.036183e-42	3.528094e-38	5.880157e-39
7	7978718	8083282	NM_032383	HPS3		0.914081	3.624488e-42	6.280150e-38	8.971644e-39
8	7978718	8021228	NM_005359	SMAD4		0.910285	3.044422e-41	5.275070e-37	6.593838e-38
9	7978718	8094704	NM_005339	UBE2K		0.908557	7.778463e-41	1.347774e-36	1.497527e-37
10	7978718	8045090	NM_020120	UGGT1		0.908309	8.882127e-41	1.539006e-36	1.539006e-37
11	7978718	8091048	NR_023350	COPB2		0.907043	1.742064e-40	3.018474e-36	2.744068e-37
12	7978718	7973902	NM_003136	SRP54		0.906358	2.498291e-40	4.328788e-36	3.607324e-37
13	7978718	8048847	NM_001135187	AGFG1		0.905299	4.336347e-40	7.513589e-36	5.779684e-37
14	7978718	8001149	NM_018206	VPS35		0.904221	7.552792e-40	1.308672e-35	9.347659e-37
15	7978718	8008834	NM_004859	CLTC		0.903929	8.769344e-40	1.519464e-35	1.012976e-36
16	7978718	8001211	NM_030790	ITFG1		0.903253	1.236421e-39	2.142347e-35	1.338967e-36
17	7978718	8045455	NM_014607	UBXN4		0.898771	1.133373e-38	1.963796e-34	1.155174e-35
18	7978718	8018315	NM_006937	SUMO2		0.897842	1.770709e-38	3.068107e-34	1.704504e-35
19	7978718	7908543	NM_133494	NEK7		0.897728	1.870126e-38	3.240367e-34	1.705456e-35
20	7978718	8089999	NR_026698	KPNA1		0.895814	4.621783e-38	8.008164e-34	4.004082e-35
21	7978718	8163882	NM_016322	RAB14		0.895727	4.814361e-38	8.341844e-34	3.972307e-35
22	7978718	8054771	NM_025181	SLC35F5		0.895560	5.206506e-38	9.021313e-34	4.100597e-35
23	7978718	8087951	NM_018165	PBRM1		0.895488	5.384464e-38	9.329661e-34	4.056374e-35
24	7978718	7989253	NM_024755	SLTM		0.895074	6.529522e-38	1.131370e-33	4.714043e-35
25	7978718	7903294	NM_033055	HIAT1		0.894765	7.535003e-38	1.305590e-33	5.222360e-35
26	7978718	7969017	NM_000321	RB1		0.893812	1.169271e-37	2.025997e-33	7.792294e-35
27	7978718	7930956	NM_007190	SEC23IP		0.893357	1.440168e-37	2.495378e-33	9.242142e-35
28	7978718	8062880	NM_003404	YWHAB		0.893193	1.552213e-37	2.689520e-33	9.605427e-35
29	7978718	8061986	NM_031483	ITCH		0.893182	1.560100e-37	2.703186e-33	9.321331e-35
30	7978718	7931728	NM_015155	LARP4B		0.891032	4.116120e-37	7.132001e-33	2.377334e-34
31	7978718	8147172	NM_003909	CPNE3		0.889803	7.099619e-37	1.230151e-32	3.968229e-34
32	7978718	7980463	NM_012245	SNW1		0.889773	7.196531e-37	1.246943e-32	3.896697e-34
33	7978718	8157858	NM_015635	GAPVD1		0.889691	7.458420e-37	1.292320e-32	3.916123e-34
34	7978718	7903519	NM_018061	PRPF38B		0.889633	7.652224e-37	1.325901e-32	3.899708e-34
35	7978718	7980833	NM_032560	SMEK1		0.889485	8.166500e-37	1.415009e-32	4.042884e-34
36	7978718	7989735	NM_006660	CLPX		0.889477	8.197070e-37	1.420306e-32	3.945295e-34
37	7978718	8106122	NM_002270	TNPO1		0.889420	8.404065e-37	1.456172e-32	3.935601e-34
38	7978718	8078738	NM_005109	OXSR1		0.889306	8.837292e-37	1.531238e-32	4.029572e-34
39	7978718	8127637	NM_018247	TMEM30A		0.889201	9.255214e-37	1.603651e-32	4.111926e-34
40	7978718	8166500	NM_003410	ZFX		0.888771	1.117040e-36	1.935495e-32	4.838737e-34
41	7978718	8126018	NM_007271	STK38		0.887702	1.777552e-36	3.079964e-32	7.512108e-34
42	7978718	8058428	NM_005006	NDUFS1		0.887601	1.856708e-36	3.217117e-32	7.659803e-34
43	7978718	8101324	NM_031370	HNRNPD		0.887321	2.094937e-36	3.629898e-32	8.441623e-34
44	7978718	7956697	NM_015026	MON2		0.887183	2.223645e-36	3.852909e-32	8.756611e-34
45	7978718	8095163	NM_001024924	EXOC1		0.887099	2.305317e-36	3.994423e-32	8.876496e-34
46	7978718	8085852	NM_018297	NGLY1		0.886501	2.979505e-36	5.162589e-32	1.122302e-33
47	7978718	8006148	NM_004871	GOSR1		0.886102	3.532021e-36	6.119932e-32	1.302113e-33
48	7978718	8002592	NM_001030007	AP1G1		0.885339	4.882708e-36	8.460268e-32	1.762556e-33
49	7978718	8006638	NM_024835	GGNBP2		0.885329	4.903277e-36	8.495909e-32	1.733859e-33
50	7978718	8163275	NM_001080398	KIAA0368		0.884557	6.789905e-36	1.176487e-31	2.352974e-33

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.