Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
14776	8178322	NM_006937	SUMO2		SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)
14803	8018315	NM_006937	SUMO2		SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)
15419	8174636	NM_006937	SUMO2		SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8018315	8178322	NM_006937	SUMO2		0.985758	1.423008e-81	7.396940e-77	7.396940e-77
2	8178322	8018315	NM_006937	SUMO2		0.985758	1.423008e-81	7.396940e-77	3.698470e-77
3	8178322	8174636	NM_006937	SUMO2		0.982965	1.343034e-77	6.981224e-73	2.327075e-73
4	8174636	8178322	NM_006937	SUMO2		0.982965	1.343034e-77	6.981224e-73	1.745306e-73
5	8018315	8174636	NM_006937	SUMO2		0.981880	3.135779e-76	1.630009e-71	3.260019e-72
6	8174636	8018315	NM_006937	SUMO2		0.981880	3.135779e-76	1.630009e-71	2.716682e-72
7	8018315	7931187	NM_004725	BUB3		0.912308	9.911549e-42	5.152122e-37	7.360174e-38
8	8018315	8109732	NM_013283	MAT2B		0.910144	3.289566e-41	1.709949e-36	2.137436e-37
9	8178322	8109732	NM_013283	MAT2B		0.904687	5.947884e-40	3.091769e-35	3.435299e-36
10	8018315	7942553	NM_014752	SPCS2		0.904590	6.251437e-40	3.249560e-35	3.249560e-36
11	8178322	7942553	NM_014752	SPCS2		0.903984	8.524390e-40	4.431063e-35	4.028239e-36
12	8178322	7931187	NM_004725	BUB3		0.899842	6.737394e-39	3.502165e-34	2.918471e-35
13	8018315	8050908	NM_000182	HADHA		0.899236	9.051579e-39	4.705101e-34	3.619309e-35
14	8018315	7978718	NM_006364	SEC23A		0.897842	1.770709e-38	9.204322e-34	6.574515e-35
15	8174636	7931187	NM_004725	BUB3		0.897043	2.590734e-38	1.346689e-33	8.977928e-35
16	8018315	8132070	NM_002047	GARS		0.896978	2.672303e-38	1.389090e-33	8.681811e-35
17	8018315	8117888	NM_006325	RAN		0.896644	3.129167e-38	1.626572e-33	9.568072e-35
18	8178322	8132070	NM_002047	GARS		0.895443	5.498516e-38	2.858184e-33	1.587880e-34
19	8018315	7918345	NM_002790	PSMA5		0.895341	5.766427e-38	2.997446e-33	1.577603e-34
20	8178322	7918345	NM_002790	PSMA5		0.894935	6.962735e-38	3.619299e-33	1.809650e-34
21	8018315	7939137	NM_006360	EIF3M		0.892059	2.595170e-37	1.348995e-32	6.423786e-34
22	8178322	7939137	NM_006360	EIF3M		0.889442	8.323964e-37	4.326880e-32	1.966763e-33
23	8018315	7973902	NM_003136	SRP54		0.887374	2.047921e-36	1.064530e-31	4.628391e-33
24	8178322	7969271	NM_001130912	SUGT1		0.884690	6.420851e-36	3.337622e-31	1.390676e-32
25	8174636	8109732	NM_013283	MAT2B		0.884266	7.668771e-36	3.986304e-31	1.594522e-32
26	8018315	7969271	NM_001130912	SUGT1		0.883129	1.231743e-35	6.402721e-31	2.462585e-32
27	8018315	8094704	NM_005339	UBE2K		0.882912	1.347695e-35	7.005452e-31	2.594612e-32
28	8018315	8023195	NM_005901	SMAD2		0.882611	1.525552e-35	7.929971e-31	2.832133e-32
29	8174636	7918345	NM_002790	PSMA5		0.882224	1.789771e-35	9.303410e-31	3.208072e-32
30	8178322	7914180	NM_014752	SPCS2		0.881901	2.043056e-35	1.062001e-30	3.540004e-32
31	8018315	8050278	NM_005742	PDIA6		0.881126	2.803592e-35	1.457335e-30	4.701082e-32
32	8178322	8117888	NM_006325	RAN		0.880997	2.954201e-35	1.535623e-30	4.798823e-32
33	8174636	7942553	NM_014752	SPCS2		0.879105	6.333839e-35	3.292393e-30	9.976947e-32
34	8018315	8150797	NM_015941	ATP6V1H		0.878515	8.013619e-35	4.165559e-30	1.225165e-31
35	8178322	7978718	NM_006364	SEC23A		0.875901	2.239601e-34	1.164167e-29	3.326192e-31
36	8174636	8117888	NM_006325	RAN		0.875835	2.297244e-34	1.194131e-29	3.317030e-31
37	8018315	8063283	NM_001316	CSE1L		0.875567	2.549475e-34	1.325243e-29	3.581737e-31
38	8018315	8158372	NM_003011	SET		0.875509	2.607010e-34	1.355150e-29	3.566184e-31
39	8018315	8027592	NM_001114093	LSM14A		0.874693	3.572908e-34	1.857234e-29	4.762137e-31
40	8178322	8158372	NM_003011	SET		0.873159	6.421426e-34	3.337922e-29	8.344804e-31
41	8018315	8046590	NM_194247	HNRNPA3		0.872354	8.707794e-34	4.526398e-29	1.104000e-30
42	8018315	7912852	NM_001412	EIF1AX		0.871941	1.017088e-33	5.286927e-29	1.258792e-30
43	8018315	7914180	NM_014752	SPCS2		0.871204	1.340395e-33	6.967509e-29	1.620351e-30
44	8018315	8112728	NM_001089704	RAP1BL		0.871071	1.408462e-33	7.321329e-29	1.663938e-30
45	8018315	8025429	NM_005968	HNRNPM		0.871018	1.436670e-33	7.467953e-29	1.659545e-30
46	8178322	8063283	NM_001316	CSE1L		0.870823	1.544852e-33	8.030294e-29	1.745716e-30
47	8018315	7964250	NM_006601	PTGES3		0.870822	1.545593e-33	8.034146e-29	1.709393e-30
48	8178322	7946728	NM_148976	PSMA1		0.870654	1.645285e-33	8.552354e-29	1.781740e-30
49	8178322	8147172	NM_003909	CPNE3		0.870417	1.796537e-33	9.338581e-29	1.905833e-30
50	8018315	8147172	NM_003909	CPNE3		0.870269	1.898382e-33	9.867981e-29	1.973596e-30

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.