[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 13061.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13061	8117888	NM_006325	RAN		RAN, member RAS oncogene family

Fetching correlation data, please wait...
Getting list of correlations for id 13061.
Getting list of p-values for id 13061.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8117888	7920317	NM_004515	ILF2	0.914636	2.633511e-42	4.563084e-38	4.563084e-38
2	8117888	8018315	NM_006937	SUMO2	0.896644	3.129167e-38	5.421908e-34	2.710954e-34
3	8117888	7918345	NM_002790	PSMA5	0.887758	1.735248e-36	3.006664e-32	1.002221e-32
4	8117888	8178322	NM_006937	SUMO2	0.880997	2.954201e-35	5.118745e-31	1.279686e-31
5	8117888	8174636	NM_006937	SUMO2	0.875835	2.297244e-34	3.980435e-30	7.960871e-31
6	8117888	8050908	NM_000182	HADHA	0.857040	1.985213e-31	3.439779e-27	5.732965e-28
7	8117888	8041000	NM_007266	GPN1	0.854424	4.711424e-31	8.163485e-27	1.166212e-27
8	8117888	7931187	NM_004725	BUB3	0.853662	6.041333e-31	1.046782e-26	1.308477e-27
9	8117888	7900576	NM_006347	PPIH	0.851120	1.370399e-30	2.374490e-26	2.638323e-27
10	8117888	8073192	NM_006003	UQCRFS1	0.845060	9.096014e-30	1.576066e-25	1.576066e-26
11	8117888	8027650	NM_005499	UBA2	0.844876	9.622953e-30	1.667369e-25	1.515790e-26
12	8117888	7967149	NM_016237	ANAPC5	0.842005	2.290985e-29	3.969590e-25	3.307992e-26
13	8117888	7950644	NM_004549	NDUFC2	0.840538	3.545986e-29	6.144129e-25	4.726253e-26
14	8117888	8109462	NM_004779	CNOT8	0.836879	1.033978e-28	1.791573e-24	1.279695e-25
15	8117888	8093156	NM_007362	NCBP2	0.835803	1.409188e-28	2.441699e-24	1.627800e-25
16	8117888	8109368	NM_005754	G3BP1	0.834430	2.085344e-28	3.613276e-24	2.258298e-25
17	8117888	8006392	NM_002815	PSMD11	0.831300	5.027812e-28	8.711690e-24	5.124524e-25
18	8117888	8164155	NM_001123355	PPP6C	0.829810	7.596566e-28	1.316257e-23	7.312539e-25
19	8117888	7916590	NM_001625	AK2	0.829607	8.033741e-28	1.392006e-23	7.326349e-25
20	8117888	8042720	NM_006429	CCT7	0.828358	1.131451e-27	1.960465e-23	9.802323e-25
21	8117888	8011875	NM_016041	DERL2	0.827433	1.455389e-27	2.521753e-23	1.200835e-24
22	8117888	7990211	NM_000520	HEXA	0.826483	1.882284e-27	3.261434e-23	1.482470e-24
23	8117888	7939137	NM_006360	EIF3M	0.825946	2.175099e-27	3.768795e-23	1.638606e-24
24	8117888	7923798	NM_022731	NUCKS1	0.825539	2.425888e-27	4.203337e-23	1.751390e-24
25	8117888	8050278	NM_005742	PDIA6	0.824744	3.001075e-27	5.199963e-23	2.079985e-24
26	8117888	8100834	NM_002092	GRSF1	0.824109	3.553534e-27	6.157208e-23	2.368157e-24
27	8117888	8067978	NM_021130	PPIA	0.824068	3.593057e-27	6.225691e-23	2.305811e-24
28	8117888	8137252	NM_130759	GIMAP1	0.823978	3.679873e-27	6.376115e-23	2.277184e-24
29	8117888	7949075	NM_016404	TRMT112	0.823488	4.190103e-27	7.260192e-23	2.503514e-24
30	8117888	7947934	NM_014342	MTCH2	0.822473	5.477295e-27	9.490509e-23	3.163503e-24
31	8117888	7944375	NM_016146	TRAPPC4	0.822021	6.167254e-27	1.068600e-22	3.447097e-24
32	8117888	7915130	NM_006802	SF3A3	0.820738	8.622224e-27	1.493973e-22	4.668665e-24
33	8117888	8094704	NM_005339	UBE2K	0.817546	1.962581e-26	3.400563e-22	1.030474e-23
34	8117888	8110894	NM_017755	NSUN2	0.815904	2.977147e-26	5.158502e-22	1.517206e-23
35	8117888	8163784	NM_012164	FBXW2	0.815664	3.163192e-26	5.480862e-22	1.565961e-23
36	8117888	8025429	NM_005968	HNRNPM	0.815506	3.291510e-26	5.703200e-22	1.584222e-23
37	8117888	8171516	NM_002893	RBBP7	0.813923	4.896236e-26	8.483708e-22	2.292894e-23
38	8117888	8135576	NM_015641	TES	0.813531	5.399156e-26	9.355118e-22	2.461873e-23
39	8117888	8027592	NM_001114093	LSM14A	0.812356	7.226195e-26	1.252083e-21	3.210469e-23
40	8117888	8164177	NM_001006617	MAPKAP1	0.811802	8.284745e-26	1.435498e-21	3.588744e-23
41	8117888	7997230	NM_002811	PSMD7	0.810569	1.121307e-25	1.942888e-21	4.738751e-23
42	8117888	8005512	NM_002767	PRPSAP2	0.810015	1.283983e-25	2.224757e-21	5.297040e-23
43	8117888	8002919	NM_001130089	KARS	0.809170	1.576625e-25	2.731818e-21	6.353066e-23
44	8117888	7978754	NM_014267	C11orf58	0.809018	1.635958e-25	2.834624e-21	6.442328e-23
45	8117888	7975976	NM_012111	AHSA1	0.808938	1.667862e-25	2.889905e-21	6.422012e-23
46	8117888	8110589	NM_015455	CNOT6	0.808052	2.066067e-25	3.579874e-21	7.782335e-23
47	8117888	7906703	NM_004550	NDUFS2	0.807233	2.516118e-25	4.359678e-21	9.275911e-23
48	8117888	8088384	NM_000925	PDHB	0.805522	3.785067e-25	6.558385e-21	1.366330e-22
49	8117888	7929116	NM_006413	RPP30	0.805343	3.949078e-25	6.842567e-21	1.396442e-22
50	8117888	8158372	NM_003011	SET	0.805333	3.958277e-25	6.858506e-21	1.371701e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation