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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 14988.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
14988 8137252 NM_130759 GIMAP1 link to infopage GTPase, IMAP family member 1

Fetching correlation data, please wait...
Getting list of correlations for id 14988.
Getting list of p-values for id 14988.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.420 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8137252 8002919 NM_001130089 KARS link to infopage 0.840668 3.412145e-29 5.912223e-25 5.912223e-25
2 8137252 8028514 NM_013234 EIF3K link to infopage 0.838500 6.456462e-29 1.118711e-24 5.593556e-25
3 8137252 8139706 NM_014302 SEC61G link to infopage 0.837178 9.483084e-29 1.643134e-24 5.477113e-25
4 8137252 7990211 NM_000520 HEXA link to infopage 0.836302 1.221004e-28 2.115634e-24 5.289086e-25
5 8137252 8006392 NM_002815 PSMD11 link to infopage 0.833997 2.358148e-28 4.085964e-24 8.171927e-25
6 8137252 8093156 NM_007362 NCBP2 link to infopage 0.828411 1.115181e-27 1.932273e-23 3.220456e-24
7 8137252 8117888 NM_006325 RAN link to infopage 0.823978 3.679873e-27 6.376115e-23 9.108736e-24
8 8137252 7918345 NM_002790 PSMA5 link to infopage 0.821716 6.680146e-27 1.157469e-22 1.446836e-23
9 8137252 8050908 NM_000182 HADHA link to infopage 0.820732 8.636226e-27 1.496399e-22 1.662665e-23
10 8137252 8022972 NM_000972 RPL7A link to infopage 0.820223 9.858506e-27 1.708183e-22 1.708183e-23
11 8137252 8042720 NM_006429 CCT7 link to infopage 0.820177 9.976043e-27 1.728549e-22 1.571408e-23
12 8137252 8073645 NM_015380 SAMM50 link to infopage 0.809227 1.555051e-25 2.694436e-21 2.245364e-22
13 8137252 7975976 NM_012111 AHSA1 link to infopage 0.804485 4.838327e-25 8.383369e-21 6.448746e-22
14 8137252 8064502 NM_003091 SNRPB link to infopage 0.802696 7.364358e-25 1.276022e-20 9.114445e-22
15 8137252 8053763 NM_031902 MRPS5 link to infopage 0.802651 7.442482e-25 1.289559e-20 8.597059e-22
16 8137252 8122136 NM_001016 RPS12 link to infopage 0.800380 1.260885e-24 2.184735e-20 1.365460e-21
17 8137252 8018315 NM_006937 SUMO2 link to infopage 0.800025 1.368344e-24 2.370930e-20 1.394665e-21
18 8137252 8073192 NM_006003 UQCRFS1 link to infopage 0.798492 1.944080e-24 3.368507e-20 1.871393e-21
19 8137252 8143781 NM_024711 GIMAP6 link to infopage 0.796297 3.197956e-24 5.541099e-20 2.916368e-21
20 8137252 8109368 NM_005754 G3BP1 link to infopage 0.794070 5.265949e-24 9.124310e-20 4.562155e-21
21 8137252 8123148 NM_014161 MRPL18 link to infopage 0.791530 9.232893e-24 1.599783e-19 7.618016e-21
22 8137252 7897404 NM_007262 PARK7 link to infopage 0.791011 1.034563e-23 1.792587e-19 8.148125e-21
23 8137252 8048120 NM_004044 ATIC link to infopage 0.789131 1.558154e-23 2.699813e-19 1.173832e-20
24 8137252 8133434 NM_022170 EIF4H link to infopage 0.788139 1.930632e-23 3.345206e-19 1.393836e-20
25 8137252 8100834 NM_002092 GRSF1 link to infopage 0.786127 2.971539e-23 5.148785e-19 2.059514e-20
26 8137252 8178322 NM_006937 SUMO2 link to infopage 0.783774 4.892260e-23 8.476819e-19 3.260315e-20
27 8137252 8163784 NM_012164 FBXW2 link to infopage 0.783627 5.045342e-23 8.742064e-19 3.237801e-20
28 8137252 7949075 NM_016404 TRMT112 link to infopage 0.782513 6.374344e-23 1.104483e-18 3.944580e-20
29 8137252 8039939 NM_017971 MRPL20 link to infopage 0.782164 6.856598e-23 1.188043e-18 4.096699e-20
30 8137252 7911559 NM_017971 MRPL20 link to infopage 0.782164 6.856598e-23 1.188043e-18 3.960142e-20
31 8137252 8104166 NM_004168 SDHA link to infopage 0.781293 8.220384e-23 1.424346e-18 4.594664e-20
32 8137252 8132580 NM_006555 YKT6 link to infopage 0.780533 9.622430e-23 1.667279e-18 5.210245e-20
33 8137252 8164067 NM_002799 PSMB7 link to infopage 0.780454 9.781567e-23 1.694852e-18 5.135916e-20
34 8137252 8064844 NM_002592 PCNA link to infopage 0.780324 1.004818e-22 1.741048e-18 5.120731e-20
35 8137252 8049073 link to infopage 0.779667 1.150749e-22 1.993903e-18 5.696867e-20
36 8137252 7906041 NM_033657 DAP3 link to infopage 0.779325 1.234728e-22 2.139413e-18 5.942815e-20
37 8137252 7915130 NM_006802 SF3A3 link to infopage 0.779040 1.309250e-22 2.268538e-18 6.131185e-20
38 8137252 8015712 NM_001040431 CCDC56 link to infopage 0.778504 1.461281e-22 2.531962e-18 6.663058e-20
39 8137252 8062174 NM_198398 ERGIC3 link to infopage 0.777658 1.736866e-22 3.009467e-18 7.716583e-20
40 8137252 7941709 NM_002896 RBM4 link to infopage 0.777497 1.794812e-22 3.109871e-18 7.774676e-20
41 8137252 7906662 NM_016406 UFC1 link to infopage 0.777225 1.897167e-22 3.287221e-18 8.017612e-20
42 8137252 8089249 NM_000986 RPL24 link to infopage 0.776346 2.267950e-22 3.929677e-18 9.356373e-20
43 8137252 7955890 NM_031157 HNRNPA1 link to infopage 0.776265 2.305402e-22 3.994569e-18 9.289696e-20
44 8137252 8041000 NM_007266 GPN1 link to infopage 0.776240 2.316873e-22 4.014447e-18 9.123742e-20
45 8137252 8005512 NM_002767 PRPSAP2 link to infopage 0.775407 2.741378e-22 4.749986e-18 1.055553e-19
46 8137252 7920317 NM_004515 ILF2 link to infopage 0.774312 3.416189e-22 5.919231e-18 1.286789e-19
47 8137252 8094704 NM_005339 UBE2K link to infopage 0.774310 3.417643e-22 5.921751e-18 1.259947e-19
48 8137252 8168280 NM_001145408 NONO link to infopage 0.773581 3.954389e-22 6.851771e-18 1.427452e-19
49 8137252 8027592 NM_001114093 LSM14A link to infopage 0.773513 4.008612e-22 6.945722e-18 1.417494e-19
50 8137252 7923798 NM_022731 NUCKS1 link to infopage 0.773505 4.014977e-22 6.956750e-18 1.391350e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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