[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 8957.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
8957 8015712 NM_001040431 CCDC56 link to infopage coiled-coil domain containing 56

Fetching correlation data, please wait...
Getting list of correlations for id 8957.
Getting list of p-values for id 8957.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.110 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8015712 8028514 NM_013234 EIF3K link to infopage 0.874182 4.346498e-34 7.531177e-30 7.531177e-30
2 8015712 8039939 NM_017971 MRPL20 link to infopage 0.850479 1.680803e-30 2.912327e-26 1.456164e-26
3 8015712 7911559 NM_017971 MRPL20 link to infopage 0.850479 1.680803e-30 2.912327e-26 9.707758e-27
4 8015712 8172358 NM_153477 UXT link to infopage 0.842665 1.879834e-29 3.257189e-25 8.142973e-26
5 8015712 7899737 NM_003757 EIF3I link to infopage 0.839525 4.780586e-29 8.283321e-25 1.656664e-25
6 8015712 8148270 NM_005005 NDUFB9 link to infopage 0.837638 8.298493e-29 1.437880e-24 2.396466e-25
7 8015712 8165309 NM_003792 EDF1 link to infopage 0.832613 3.483283e-28 6.035485e-24 8.622121e-25
8 8015712 8073645 NM_015380 SAMM50 link to infopage 0.829034 9.403495e-28 1.629344e-23 2.036679e-24
9 8015712 8043100 NM_021103 TMSB10 link to infopage 0.827475 1.439125e-27 2.493572e-23 2.770636e-24
10 8015712 8013348 NM_002952 RPS2 link to infopage 0.825065 2.754271e-27 4.772326e-23 4.772326e-24
11 8015712 8085026 NM_000996 RPL35A link to infopage 0.824948 2.841961e-27 4.924266e-23 4.476605e-24
12 8015712 8042720 NM_006429 CCT7 link to infopage 0.824369 3.316062e-27 5.745741e-23 4.788118e-24
13 8015712 7929243 NM_017838 NHP2 link to infopage 0.822284 5.755790e-27 9.973057e-23 7.671582e-24
14 8015712 7912670 NM_006004 UQCRH link to infopage 0.818311 1.613931e-26 2.796458e-22 1.997470e-23
15 8015712 7949075 NM_016404 TRMT112 link to infopage 0.814914 3.820679e-26 6.620090e-22 4.413394e-23
16 8015712 7998655 NM_002952 RPS2 link to infopage 0.814329 4.423197e-26 7.664073e-22 4.790046e-23
17 8015712 8089249 NM_000986 RPL24 link to infopage 0.808753 1.744205e-25 3.022184e-21 1.777756e-22
18 8015712 7942586 NM_001005 RPS3 link to infopage 0.807504 2.357481e-25 4.084808e-21 2.269338e-22
19 8015712 8056966 ENST00000405359 link to infopage 0.807185 2.544880e-25 4.409513e-21 2.320796e-22
20 8015712 8036737 NM_001020 RPS16 link to infopage 0.806607 2.922661e-25 5.064094e-21 2.532047e-22
21 8015712 7952056 NM_000732 CD3D link to infopage 0.805627 3.691803e-25 6.396787e-21 3.046089e-22
22 8015712 7978201 NM_006156 NEDD8 link to infopage 0.802535 7.646563e-25 1.324920e-20 6.022363e-22
23 8015712 7950644 NM_004549 NDUFC2 link to infopage 0.799113 1.686870e-24 2.922840e-20 1.270800e-21
24 8015712 8009227 NM_002805 PSMC5 link to infopage 0.798161 2.096336e-24 3.632322e-20 1.513467e-21
25 8015712 7929116 NM_006413 RPP30 link to infopage 0.796227 3.249056e-24 5.629640e-20 2.251856e-21
26 8015712 8081945 NM_004547 NDUFB4 link to infopage 0.793651 5.780495e-24 1.001586e-19 3.852255e-21
27 8015712 8093314 NM_004547 NDUFB4 link to infopage 0.793651 5.780495e-24 1.001586e-19 3.709579e-21
28 8015712 7918050 NM_002295 RPSA link to infopage 0.793372 6.149251e-24 1.065481e-19 3.805288e-21
29 8015712 8047635 NM_000976 RPL12 link to infopage 0.793313 6.230428e-24 1.079546e-19 3.722573e-21
30 8015712 8073343 CR605850 link to infopage 0.791670 8.953393e-24 1.551354e-19 5.171181e-21
31 8015712 8076209 NM_000967 RPL3 link to infopage 0.791313 9.683310e-24 1.677827e-19 5.412346e-21
32 8015712 8049073 link to infopage 0.791034 1.029280e-23 1.783433e-19 5.573228e-21
33 8015712 8000323 NM_005003 NDUFAB1 link to infopage 0.790034 1.280456e-23 2.218646e-19 6.723170e-21
34 8015712 8002919 NM_001130089 KARS link to infopage 0.788672 1.720547e-23 2.981191e-19 8.768210e-21
35 8015712 8125750 NM_000976 RPL12 link to infopage 0.788306 1.862355e-23 3.226903e-19 9.219723e-21
36 8015712 8078905 NM_002295 RPSA link to infopage 0.788234 1.891190e-23 3.276865e-19 9.102403e-21
37 8015712 8123148 NM_014161 MRPL18 link to infopage 0.787508 2.211177e-23 3.831307e-19 1.035488e-20
38 8015712 8139706 NM_014302 SEC61G link to infopage 0.787171 2.377205e-23 4.118983e-19 1.083943e-20
39 8015712 8119648 NM_057161 KLHDC3 link to infopage 0.786538 2.722089e-23 4.716563e-19 1.209375e-20
40 8015712 7918345 NM_002790 PSMA5 link to infopage 0.785812 3.177994e-23 5.506511e-19 1.376628e-20
41 8015712 8075798 NM_003753 EIF3D link to infopage 0.785104 3.693498e-23 6.399724e-19 1.560908e-20
42 8015712 7913256 NM_005216 DDOST link to infopage 0.784018 4.646753e-23 8.051429e-19 1.917007e-20
43 8015712 8064502 NM_003091 SNRPB link to infopage 0.783023 5.727509e-23 9.924054e-19 2.307920e-20
44 8015712 8164100 NM_007209 RPL35 link to infopage 0.782640 6.207176e-23 1.075517e-18 2.444358e-20
45 8015712 8137252 NM_130759 GIMAP1 link to infopage 0.778504 1.461281e-22 2.531962e-18 5.626582e-20
46 8015712 7897404 NM_007262 PARK7 link to infopage 0.775054 2.943286e-22 5.099832e-18 1.108659e-19
47 8015712 7958819 NM_006817 ERP29 link to infopage 0.774560 3.250670e-22 5.632436e-18 1.198391e-19
48 8015712 8030007 NM_001425 EMP3 link to infopage 0.773783 3.798261e-22 6.581246e-18 1.371093e-19
49 8015712 8034806 NM_005804 DDX39 link to infopage 0.773410 4.091375e-22 7.089125e-18 1.446760e-19
50 8015712 7940688 NM_002696 POLR2G link to infopage 0.773088 4.362446e-22 7.558811e-18 1.511762e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Valid XHTML 1.0 Transitional Valid CSS!