[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12905	8002919	NM_001130089	KARS		lysyl-tRNA synthetase

Fetching correlation data, please wait...
Getting list of correlations for id 12905.
Getting list of p-values for id 12905.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.162 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8002919	7975976	NM_012111	AHSA1	0.849808	2.079493e-30	3.603138e-26	3.603138e-26
2	8002919	7918345	NM_002790	PSMA5	0.849626	2.202246e-30	3.815831e-26	1.907915e-26
3	8002919	8042720	NM_006429	CCT7	0.843885	1.300690e-29	2.253705e-25	7.512350e-26
4	8002919	8137252	NM_130759	GIMAP1	0.840668	3.412145e-29	5.912223e-25	1.478056e-25
5	8002919	7906041	NM_033657	DAP3	0.838096	7.263754e-29	1.258591e-24	2.517181e-25
6	8002919	8020241	NM_020232	PSMG2	0.837298	9.159712e-29	1.587103e-24	2.645172e-25
7	8002919	8006392	NM_002815	PSMD11	0.835246	1.652474e-28	2.863241e-24	4.090345e-25
8	8002919	8053763	NM_031902	MRPS5	0.833865	2.447834e-28	4.241362e-24	5.301703e-25
9	8002919	8004497	NM_001416	EIF4A1	0.832864	3.246393e-28	5.625024e-24	6.250027e-25
10	8002919	8164177	NM_001006617	MAPKAP1	0.830956	5.532950e-28	9.586942e-24	9.586942e-25
11	8002919	8073192	NM_006003	UQCRFS1	0.830462	6.345731e-28	1.099525e-23	9.995680e-25
12	8002919	7920317	NM_004515	ILF2	0.830312	6.613604e-28	1.145939e-23	9.549493e-25
13	8002919	8139706	NM_014302	SEC61G	0.826927	1.669233e-27	2.892280e-23	2.224831e-24
14	8002919	8143781	NM_024711	GIMAP6	0.825251	2.620542e-27	4.540614e-23	3.243296e-24
15	8002919	8132070	NM_002047	GARS	0.823466	4.215066e-27	7.303444e-23	4.868963e-24
16	8002919	7990211	NM_000520	HEXA	0.822115	6.016866e-27	1.042542e-22	6.515890e-24
17	8002919	8028514	NM_013234	EIF3K	0.820917	8.230928e-27	1.426173e-22	8.389253e-24
18	8002919	8018315	NM_006937	SUMO2	0.819917	1.067103e-26	1.848969e-22	1.027205e-23
19	8002919	8018600	NM_014230	SRP68	0.819399	1.219886e-26	2.113696e-22	1.112472e-23
20	8002919	8022972	NM_000972	RPL7A	0.815584	3.228079e-26	5.593293e-22	2.796647e-23
21	8002919	8150818	NM_006756	TCEA1	0.814811	3.920572e-26	6.793175e-22	3.234845e-23
22	8002919	8178322	NM_006937	SUMO2	0.813232	5.815751e-26	1.007695e-21	4.580433e-23
23	8002919	8171516	NM_002893	RBBP7	0.813001	6.159324e-26	1.067226e-21	4.640113e-23
24	8002919	8161988	NM_013438	UBQLN1	0.812238	7.440461e-26	1.289209e-21	5.371703e-23
25	8002919	8109368	NM_005754	G3BP1	0.810537	1.130257e-25	1.958397e-21	7.833587e-23
26	8002919	8117888	NM_006325	RAN	0.809170	1.576625e-25	2.731818e-21	1.050699e-22
27	8002919	8078600	NM_006756	TCEA1	0.809014	1.637677e-25	2.837604e-21	1.050964e-22
28	8002919	7944375	NM_016146	TRAPPC4	0.808261	1.964668e-25	3.404181e-21	1.215779e-22
29	8002919	8140828	NM_003130	SRI	0.807812	2.188897e-25	3.792701e-21	1.307828e-22
30	8002919	7933164	NM_004966	HNRNPF	0.805908	3.452817e-25	5.982696e-21	1.994232e-22
31	8002919	7981032	NM_020414	DDX24	0.804089	5.312161e-25	9.204381e-21	2.969155e-22
32	8002919	7948997	NM_015459	ATL3	0.803868	5.595551e-25	9.695411e-21	3.029816e-22
33	8002919	8041000	NM_007266	GPN1	0.803806	5.677711e-25	9.837770e-21	2.981142e-22
34	8002919	8048120	NM_004044	ATIC	0.803068	6.751219e-25	1.169784e-20	3.440540e-22
35	8002919	8135576	NM_015641	TES	0.802423	7.850058e-25	1.360179e-20	3.886227e-22
36	8002919	7997230	NM_002811	PSMD7	0.802222	8.226094e-25	1.425335e-20	3.959265e-22
37	8002919	7910446	NM_007357	COG2	0.801994	8.675147e-25	1.503143e-20	4.062548e-22
38	8002919	8066668	NM_020967	NCOA5	0.801144	1.056622e-24	1.830809e-20	4.817919e-22
39	8002919	8059689	NM_005381	NCL	0.800945	1.106594e-24	1.917396e-20	4.916400e-22
40	8002919	8027650	NM_005499	UBA2	0.800680	1.176381e-24	2.038316e-20	5.095789e-22
41	8002919	7979931	NM_005466	MED6	0.799321	1.608201e-24	2.786530e-20	6.796415e-22
42	8002919	7923798	NM_022731	NUCKS1	0.799004	1.729462e-24	2.996639e-20	7.134856e-22
43	8002919	7906662	NM_016406	UFC1	0.798315	2.023970e-24	3.506934e-20	8.155660e-22
44	8002919	8100834	NM_002092	GRSF1	0.798009	2.170301e-24	3.760480e-20	8.546546e-22
45	8002919	8023063	NM_001001937	ATP5A1	0.797549	2.409274e-24	4.174549e-20	9.276777e-22
46	8002919	8094704	NM_005339	UBE2K	0.797533	2.418421e-24	4.190397e-20	9.109559e-22
47	8002919	8168280	NM_001145408	NONO	0.797032	2.708852e-24	4.693628e-20	9.986443e-22
48	8002919	8092564	NM_004593	TRA2B	0.796937	2.767782e-24	4.795736e-20	9.991117e-22
49	8002919	8104760	NM_152295	TARS	0.796802	2.853204e-24	4.943747e-20	1.008928e-21
50	8002919	8147483	NM_178812	MTDH	0.795674	3.679158e-24	6.374876e-20	1.274975e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation