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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 14542.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
14542 8006392 NM_002815 PSMD11 link to infopage proteasome (prosome, macropain) 26S subunit, non-ATPase, 11

Fetching correlation data, please wait...
Getting list of correlations for id 14542.
Getting list of p-values for id 14542.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.117 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8006392 8164177 NM_001006617 MAPKAP1 link to infopage 0.893858 1.144854e-37 1.983689e-33 1.983689e-33
2 8006392 8101324 NM_031370 HNRNPD link to infopage 0.889303 8.846425e-37 1.532820e-32 7.664100e-33
3 8006392 8050908 NM_000182 HADHA link to infopage 0.883384 1.107981e-35 1.919798e-31 6.399326e-32
4 8006392 8018600 NM_014230 SRP68 link to infopage 0.880627 3.433865e-35 5.949857e-31 1.487464e-31
5 8006392 8136539 NM_016019 LUC7L2 link to infopage 0.879933 4.545231e-35 7.875521e-31 1.575104e-31
6 8006392 8168280 NM_001145408 NONO link to infopage 0.879606 5.182043e-35 8.978926e-31 1.496488e-31
7 8006392 7944285 NM_001655 ARCN1 link to infopage 0.877208 1.343577e-34 2.328016e-30 3.325738e-31
8 8006392 8094704 NM_005339 UBE2K link to infopage 0.872053 9.750413e-34 1.689454e-29 2.111818e-30
9 8006392 8163784 NM_012164 FBXW2 link to infopage 0.871482 1.207946e-33 2.093007e-29 2.325564e-30
10 8006392 8160914 NM_007126 VCP link to infopage 0.871045 1.422574e-33 2.464893e-29 2.464893e-30
11 8006392 7941709 NM_002896 RBM4 link to infopage 0.870409 1.802334e-33 3.122905e-29 2.839004e-30
12 8006392 8025429 NM_005968 HNRNPM link to infopage 0.869969 2.121091e-33 3.675214e-29 3.062678e-30
13 8006392 8109368 NM_005754 G3BP1 link to infopage 0.866468 7.595591e-33 1.316088e-28 1.012375e-29
14 8006392 7906703 NM_004550 NDUFS2 link to infopage 0.865300 1.153132e-32 1.998033e-28 1.427166e-29
15 8006392 8171516 NM_002893 RBBP7 link to infopage 0.863173 2.442741e-32 4.232536e-28 2.821691e-29
16 8006392 8061186 NM_006363 SEC23B link to infopage 0.862667 2.914657e-32 5.050227e-28 3.156392e-29
17 8006392 7978718 NM_006364 SEC23A link to infopage 0.859011 1.023591e-31 1.773576e-27 1.043280e-28
18 8006392 8132070 NM_002047 GARS link to infopage 0.858398 1.259103e-31 2.181648e-27 1.212026e-28
19 8006392 7947894 NM_198700 CELF1 link to infopage 0.855681 3.117152e-31 5.401089e-27 2.842679e-28
20 8006392 7952557 NM_003139 SRPR link to infopage 0.855107 3.766155e-31 6.525616e-27 3.262808e-28
21 8006392 7990211 NM_000520 HEXA link to infopage 0.853876 5.635149e-31 9.764022e-27 4.649534e-28
22 8006392 7899504 NM_006582 GMEB1 link to infopage 0.853789 5.797123e-31 1.004467e-26 4.565761e-28
23 8006392 8066668 NM_020967 NCOA5 link to infopage 0.853160 7.111681e-31 1.232241e-26 5.357569e-28
24 8006392 8006148 NM_004871 GOSR1 link to infopage 0.852938 7.640079e-31 1.323796e-26 5.515819e-28
25 8006392 7924526 NM_005426 TP53BP2 link to infopage 0.852717 8.207607e-31 1.422132e-26 5.688528e-28
26 8006392 7993680 BC050464 C16orf62 link to infopage 0.852235 9.585133e-31 1.660816e-26 6.387754e-28
27 8006392 7990487 NM_015477 SIN3A link to infopage 0.851177 1.345568e-30 2.331465e-26 8.635056e-28
28 8006392 8093156 NM_007362 NCBP2 link to infopage 0.850964 1.440260e-30 2.495538e-26 8.912637e-28
29 8006392 7980463 NM_012245 SNW1 link to infopage 0.850955 1.444357e-30 2.502637e-26 8.629782e-28
30 8006392 8099340 NM_017491 WDR1 link to infopage 0.847734 3.985829e-30 6.906246e-26 2.302082e-27
31 8006392 8114455 NM_004134 HSPA9 link to infopage 0.846505 5.836532e-30 1.011296e-25 3.262245e-27
32 8006392 7999233 NM_032569 GLYR1 link to infopage 0.843839 1.319167e-29 2.285721e-25 7.142878e-27
33 8006392 7920515 NM_017582 UBE2Q1 link to infopage 0.843150 1.624532e-29 2.814826e-25 8.529777e-27
34 8006392 7948814 NM_001079559 HNRNPUL2 link to infopage 0.842708 1.855721e-29 3.215408e-25 9.457083e-27
35 8006392 8006573 NM_139215 TAF15 link to infopage 0.842162 2.186046e-29 3.787761e-25 1.082217e-26
36 8006392 8164155 NM_001123355 PPP6C link to infopage 0.841451 2.703664e-29 4.684639e-25 1.301289e-26
37 8006392 8053890 NM_020151 STARD7 link to infopage 0.841331 2.801960e-29 4.854957e-25 1.312150e-26
38 8006392 7975863 NM_017926 C14orf118 link to infopage 0.840852 3.230141e-29 5.596866e-25 1.472859e-26
39 8006392 8161988 NM_013438 UBQLN1 link to infopage 0.840753 3.326621e-29 5.764035e-25 1.477958e-26
40 8006392 8006850 NM_016507 CDK12 link to infopage 0.840544 3.539466e-29 6.132833e-25 1.533208e-26
41 8006392 8133434 NM_022170 EIF4H link to infopage 0.840334 3.766786e-29 6.526710e-25 1.591880e-26
42 8006392 8058428 NM_005006 NDUFS1 link to infopage 0.838407 6.633490e-29 1.149385e-24 2.736630e-26
43 8006392 8164607 NM_015033 FNBP1 link to infopage 0.838185 7.076910e-29 1.226216e-24 2.851665e-26
44 8006392 8019046 NM_014740 EIF4A3 link to infopage 0.837713 8.120849e-29 1.407099e-24 3.197953e-26
45 8006392 8018315 NM_006937 SUMO2 link to infopage 0.837613 8.359794e-29 1.448501e-24 3.218892e-26
46 8006392 8132943 NM_001762 CCT6A link to infopage 0.837016 9.937049e-29 1.721793e-24 3.743027e-26
47 8006392 8062349 NM_002951 RPN2 link to infopage 0.836975 1.005438e-28 1.742122e-24 3.706643e-26
48 8006392 7959282 NM_194271 RNF34 link to infopage 0.836968 1.007612e-28 1.745890e-24 3.637270e-26
49 8006392 7900119 NM_005119 THRAP3 link to infopage 0.836189 1.261227e-28 2.185329e-24 4.459854e-26
50 8006392 8138030 NR_003085 PMS2 link to infopage 0.836095 1.296011e-28 2.245599e-24 4.491197e-26

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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