[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15261	7947894	NM_198700	CELF1		CUGBP, Elav-like family member 1

Fetching correlation data, please wait...
Getting list of correlations for id 15261.
Getting list of p-values for id 15261.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7947894	8160914	NM_007126	VCP	0.893114	1.609163e-37	2.788197e-33	2.788197e-33
2	7947894	8045090	NM_020120	UGGT1	0.891827	2.882141e-37	4.993885e-33	2.496943e-33
3	7947894	8049199	NM_001103147	GIGYF2	0.877983	9.898897e-35	1.715182e-30	5.717273e-31
4	7947894	8018922	NM_004762	CYTH1	0.875119	3.031538e-34	5.252747e-30	1.313187e-30
5	7947894	8145954	NM_006283	TACC1	0.874796	3.433361e-34	5.948985e-30	1.189797e-30
6	7947894	8101324	NM_031370	HNRNPD	0.874177	4.354852e-34	7.545653e-30	1.257609e-30
7	7947894	8108510	NM_020690	ANKHD1-EIF4EBP3	0.873492	5.656117e-34	9.800354e-30	1.400051e-30
8	7947894	7975863	NM_017926	C14orf118	0.865747	9.834861e-33	1.704086e-28	2.130108e-29
9	7947894	7989516	NM_003922	HERC1	0.865264	1.168237e-32	2.024204e-28	2.249116e-29
10	7947894	8001693	NM_016284	CNOT1	0.864986	1.289238e-32	2.233862e-28	2.233862e-29
11	7947894	8079869	NM_005778	RBM5	0.863571	2.124726e-32	3.681513e-28	3.346830e-29
12	7947894	7944285	NM_001655	ARCN1	0.863472	2.199424e-32	3.810942e-28	3.175785e-29
13	7947894	7911619	NM_002074	GNB1	0.863054	2.546411e-32	4.412166e-28	3.393974e-29
14	7947894	7966268	NM_057169	GIT2	0.860900	5.372821e-32	9.309487e-28	6.649633e-29
15	7947894	8164607	NM_015033	FNBP1	0.860808	5.544325e-32	9.606651e-28	6.404434e-29
16	7947894	8012961	NM_006311	NCOR1	0.859491	8.696152e-32	1.506782e-27	9.417389e-29
17	7947894	7960594	NM_001273	CHD4	0.858823	1.090659e-31	1.889786e-27	1.111639e-28
18	7947894	8006850	NM_016507	CDK12	0.857058	1.973280e-31	3.419102e-27	1.899501e-28
19	7947894	8024936	NM_002967	SAFB	0.856993	2.016771e-31	3.494458e-27	1.839189e-28
20	7947894	7985695	NM_006738	AKAP13	0.856976	2.028424e-31	3.514650e-27	1.757325e-28
21	7947894	7952557	NM_003139	SRPR	0.855771	3.025880e-31	5.242943e-27	2.496639e-28
22	7947894	8006392	NM_002815	PSMD11	0.855681	3.117152e-31	5.401089e-27	2.455041e-28
23	7947894	7990231	NR_023318	ADPGK	0.855377	3.445347e-31	5.969752e-27	2.595544e-28
24	7947894	7997168	NM_014761	KIAA0174	0.854646	4.380691e-31	7.590424e-27	3.162677e-28
25	7947894	7900833	NM_014663	KDM4A	0.854261	4.969787e-31	8.611150e-27	3.444460e-28
26	7947894	8152148	NM_015902	UBR5	0.853647	6.069863e-31	1.051725e-26	4.045097e-28
27	7947894	8011542	NM_015113	ZZEF1	0.852431	9.000278e-31	1.559478e-26	5.775845e-28
28	7947894	8022996	NM_020964	KIAA1632	0.852423	9.021796e-31	1.563207e-26	5.582881e-28
29	7947894	7948814	NM_001079559	HNRNPUL2	0.851888	1.071590e-30	1.856743e-26	6.402563e-28
30	7947894	7899504	NM_006582	GMEB1	0.851709	1.135152e-30	1.966878e-26	6.556261e-28
31	7947894	8047865	NM_015040	PIKFYVE	0.851372	1.264320e-30	2.190688e-26	7.066735e-28
32	7947894	8063636	NM_001001433	STX16	0.851298	1.294868e-30	2.243618e-26	7.011307e-28
33	7947894	7987840	NM_015289	VPS39	0.850765	1.534674e-30	2.659130e-26	8.057970e-28
34	7947894	7980463	NM_012245	SNW1	0.850125	1.880501e-30	3.258344e-26	9.583365e-28
35	7947894	8068289	NM_138927	SON	0.850099	1.896226e-30	3.285590e-26	9.387401e-28
36	7947894	8062213	NM_016436	PHF20	0.848940	2.733893e-30	4.737016e-26	1.315838e-27
37	7947894	7972840	NM_006322	TUBGCP3	0.848437	3.200652e-30	5.545770e-26	1.498857e-27
38	7947894	8054888	NM_015282	CLASP1	0.848110	3.545474e-30	6.143243e-26	1.616643e-27
39	7947894	8009014	NM_006852	TLK2	0.848004	3.664710e-30	6.349842e-26	1.628165e-27
40	7947894	7960221	NM_005056	KDM5A	0.847476	4.319106e-30	7.483714e-26	1.870929e-27
41	7947894	8163784	NM_012164	FBXW2	0.847475	4.321010e-30	7.487014e-26	1.826101e-27
42	7947894	7913169	NM_004930	CAPZB	0.847203	4.701340e-30	8.146013e-26	1.939527e-27
43	7947894	8050719	NM_006277	ITSN2	0.846830	5.277830e-30	9.144897e-26	2.126720e-27
44	7947894	7900119	NM_005119	THRAP3	0.845701	7.475038e-30	1.295200e-25	2.943636e-27
45	7947894	7920766	NM_018489	ASH1L	0.845637	7.623870e-30	1.320988e-25	2.935529e-27
46	7947894	8082478	NM_016128	COPG	0.843812	1.329757e-29	2.304069e-25	5.008846e-27
47	7947894	8108330	NM_016604	KDM3B	0.843242	1.580257e-29	2.738112e-25	5.825770e-27
48	7947894	8063242	NM_006420	ARFGEF2	0.842025	2.277711e-29	3.946590e-25	8.222063e-27
49	7947894	7970413	NR_003272	PSPC1	0.840555	3.528128e-29	6.113187e-25	1.247589e-26
50	7947894	8005903	NM_003170	SUPT6H	0.840021	4.131426e-29	7.158522e-25	1.431704e-26

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation