[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15649	8160914	NM_007126	VCP		valosin-containing protein

Fetching correlation data, please wait...
Getting list of correlations for id 15649.
Getting list of p-values for id 15649.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.130 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8160914	8099340	NM_017491	WDR1	0.931602	4.508798e-47	7.812394e-43	7.812394e-43
2	8160914	7960594	NM_001273	CHD4	0.914792	2.405768e-42	4.168474e-38	2.084237e-38
3	8160914	7913169	NM_004930	CAPZB	0.906421	2.417163e-40	4.188218e-36	1.396073e-36
4	8160914	7911619	NM_002074	GNB1	0.901280	3.321533e-39	5.755220e-35	1.438805e-35
5	8160914	7947894	NM_198700	CELF1	0.893114	1.609163e-37	2.788197e-33	5.576393e-34
6	8160914	7952557	NM_003139	SRPR	0.892329	2.297896e-37	3.981564e-33	6.635940e-34
7	8160914	7931728	NM_015155	LARP4B	0.881846	2.089595e-35	3.620641e-31	5.172345e-32
8	8160914	7944285	NM_001655	ARCN1	0.878654	7.583788e-35	1.314043e-30	1.642554e-31
9	8160914	7955908	NM_005337	NCKAP1L	0.876005	2.150614e-34	3.726368e-30	4.140409e-31
10	8160914	8006392	NM_002815	PSMD11	0.871045	1.422574e-33	2.464893e-29	2.464893e-30
11	8160914	8101324	NM_031370	HNRNPD	0.870195	1.951054e-33	3.380592e-29	3.073265e-30
12	8160914	8027592	NM_001114093	LSM14A	0.869415	2.601916e-33	4.508340e-29	3.756950e-30
13	8160914	8163784	NM_012164	FBXW2	0.866979	6.318801e-33	1.094859e-28	8.421990e-30
14	8160914	8164607	NM_015033	FNBP1	0.862258	3.359881e-32	5.821666e-28	4.158333e-29
15	8160914	8011542	NM_015113	ZZEF1	0.861501	4.368251e-32	7.568868e-28	5.045912e-29
16	8160914	8115168	NM_018047	RBM22	0.861015	5.163345e-32	8.946528e-28	5.591580e-29
17	8160914	7978718	NM_006364	SEC23A	0.859874	7.631862e-32	1.322373e-27	7.778663e-29
18	8160914	8018922	NM_004762	CYTH1	0.859565	8.481558e-32	1.469600e-27	8.164442e-29
19	8160914	7987840	NM_015289	VPS39	0.858344	1.282156e-31	2.221591e-27	1.169259e-28
20	8160914	8001693	NM_016284	CNOT1	0.858077	1.402771e-31	2.430581e-27	1.215290e-28
21	8160914	7990211	NM_000520	HEXA	0.857870	1.503871e-31	2.605758e-27	1.240837e-28
22	8160914	8006690	NM_012138	AATF	0.857734	1.574135e-31	2.727504e-27	1.239774e-28
23	8160914	8045090	NM_020120	UGGT1	0.856935	2.056030e-31	3.562483e-27	1.548906e-28
24	8160914	8124059	NM_005124	NUP153	0.854555	4.514456e-31	7.822199e-27	3.259249e-28
25	8160914	7977693	NM_020920	CHD8	0.854315	4.881992e-31	8.459028e-27	3.383611e-28
26	8160914	7900119	NM_005119	THRAP3	0.854271	4.952480e-31	8.581162e-27	3.300447e-28
27	8160914	8053909	NM_014014	SNRNP200	0.853109	7.228161e-31	1.252423e-26	4.638605e-28
28	8160914	7980463	NM_012245	SNW1	0.852815	7.950467e-31	1.377577e-26	4.919919e-28
29	8160914	8003758	NM_000430	PAFAH1B1	0.852209	9.667107e-31	1.675020e-26	5.775930e-28
30	8160914	8116622	NM_003804	RIPK1	0.848831	2.829132e-30	4.902038e-26	1.634013e-27
31	8160914	8152148	NM_015902	UBR5	0.848734	2.916326e-30	5.053117e-26	1.630038e-27
32	8160914	7949496	NM_005507	CFL1	0.847228	4.666080e-30	8.084917e-26	2.526536e-27
33	8160914	8050908	NM_000182	HADHA	0.846585	5.693018e-30	9.864292e-26	2.989179e-27
34	8160914	8005903	NM_003170	SUPT6H	0.846354	6.115273e-30	1.059593e-25	3.116451e-27
35	8160914	8090490	NM_002950	RPN1	0.844862	9.663263e-30	1.674354e-25	4.783867e-27
36	8160914	8082478	NM_016128	COPG	0.844391	1.115622e-29	1.933037e-25	5.369548e-27
37	8160914	8093112	NM_015562	UBXN7	0.843489	1.466690e-29	2.541333e-25	6.868468e-27
38	8160914	8110894	NM_017755	NSUN2	0.843191	1.604528e-29	2.780166e-25	7.316226e-27
39	8160914	7997168	NM_014761	KIAA0174	0.841790	2.443390e-29	4.233661e-25	1.085554e-26
40	8160914	7948814	NM_001079559	HNRNPUL2	0.840703	3.376432e-29	5.850343e-25	1.462586e-26
41	8160914	7916747	NM_002227	JAK1	0.840483	3.603961e-29	6.244584e-25	1.523069e-26
42	8160914	7906703	NM_004550	NDUFS2	0.839365	5.012070e-29	8.684414e-25	2.067718e-26
43	8160914	8049199	NM_001103147	GIGYF2	0.839274	5.146456e-29	8.917264e-25	2.073782e-26
44	8160914	8025429	NM_005968	HNRNPM	0.839016	5.551296e-29	9.618731e-25	2.186075e-26
45	8160914	7930956	NM_007190	SEC23IP	0.838713	6.066768e-29	1.051189e-24	2.335975e-26
46	8160914	8002729	NR_027264	GLG1	0.838378	6.689981e-29	1.159173e-24	2.519941e-26
47	8160914	8110289	NM_022455	NSD1	0.838129	7.194833e-29	1.246649e-24	2.652444e-26
48	8160914	8091048	NR_023350	COPB2	0.837571	8.462191e-29	1.466244e-24	3.054675e-26
49	8160914	8164177	NM_001006617	MAPKAP1	0.837337	9.055733e-29	1.569087e-24	3.202218e-26
50	8160914	7936614	NM_003750	EIF3A	0.837064	9.801592e-29	1.698322e-24	3.396644e-26

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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