[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13546	8082478	NM_016128	COPG		coatomer protein complex, subunit gamma

Fetching correlation data, please wait...
Getting list of correlations for id 13546.
Getting list of p-values for id 13546.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8082478	8099340	NM_017491	WDR1	0.863166	2.448299e-32	4.242168e-28	4.242168e-28
2	8082478	7925851	NM_014023	WDR37	0.862804	2.779061e-32	4.815280e-28	2.407640e-28
3	8082478	7921752	NM_001025598	ARHGAP30	0.862764	2.818098e-32	4.882919e-28	1.627640e-28
4	8082478	7913169	NM_004930	CAPZB	0.857547	1.675677e-31	2.903445e-27	7.258613e-28
5	8082478	8005903	NM_003170	SUPT6H	0.856043	2.765262e-31	4.791369e-27	9.582738e-28
6	8082478	8115783	NM_005990	STK10	0.845488	7.980976e-30	1.382864e-25	2.304773e-26
7	8082478	8160914	NM_007126	VCP	0.844391	1.115622e-29	1.933037e-25	2.761482e-26
8	8082478	8011542	NM_015113	ZZEF1	0.844153	1.199307e-29	2.078040e-25	2.597550e-26
9	8082478	7947894	NM_198700	CELF1	0.843812	1.329757e-29	2.304069e-25	2.560077e-26
10	8082478	8013696	NM_014680	KIAA0100	0.842173	2.178887e-29	3.775357e-25	3.775357e-26
11	8082478	7947681	NM_004308	ARHGAP1	0.838177	7.093901e-29	1.229160e-24	1.117418e-25
12	8082478	7929831	NM_017902	HIF1AN	0.836345	1.205943e-28	2.089537e-24	1.741281e-25
13	8082478	7956443	NM_004990	MARS	0.834922	1.812948e-28	3.141294e-24	2.416380e-25
14	8082478	7905700	NM_014847	UBAP2L	0.834698	1.932230e-28	3.347974e-24	2.391410e-25
15	8082478	7963935	NM_032364	DNAJC14	0.833933	2.400652e-28	4.159609e-24	2.773073e-25
16	8082478	7940051	NM_015457	ZDHHC5	0.832877	3.234782e-28	5.604907e-24	3.503067e-25
17	8082478	7952557	NM_003139	SRPR	0.832435	3.661908e-28	6.344987e-24	3.732345e-25
18	8082478	7997168	NM_014761	KIAA0174	0.831230	5.127816e-28	8.884966e-24	4.936092e-25
19	8082478	7956593	NM_006812	OS9	0.829687	7.858959e-28	1.361722e-23	7.166957e-25
20	8082478	7999233	NM_032569	GLYR1	0.827415	1.462650e-27	2.534333e-23	1.267166e-24
21	8082478	8061186	NM_006363	SEC23B	0.826491	1.878201e-27	3.254360e-23	1.549695e-24
22	8082478	8077550	NM_001077525	MTMR14	0.824730	3.012050e-27	5.218979e-23	2.372263e-24
23	8082478	7960594	NM_001273	CHD4	0.818172	1.672502e-26	2.897945e-22	1.259976e-23
24	8082478	8163784	NM_012164	FBXW2	0.815849	3.019285e-26	5.231514e-22	2.179798e-23
25	8082478	7928369	NM_004922	SEC24C	0.815301	3.466545e-26	6.006483e-22	2.402593e-23
26	8082478	7963244	NM_005653	TFCP2	0.814654	4.077826e-26	7.065649e-22	2.717557e-23
27	8082478	8108330	NM_016604	KDM3B	0.814379	4.368483e-26	7.569270e-22	2.803433e-23
28	8082478	7955908	NM_005337	NCKAP1L	0.811427	9.086758e-26	1.574462e-21	5.623080e-23
29	8082478	7913001	NM_020765	UBR4	0.810139	1.245624e-25	2.158293e-21	7.442391e-23
30	8082478	8146171	NM_001556	IKBKB	0.809797	1.353974e-25	2.346031e-21	7.820103e-23
31	8082478	8066716	NM_133171	ELMO2	0.806909	2.718778e-25	4.710826e-21	1.519621e-22
32	8082478	7964579	NM_005730	CTDSP2	0.804978	4.306312e-25	7.461547e-21	2.331734e-22
33	8082478	7911619	NM_002074	GNB1	0.804885	4.402299e-25	7.627864e-21	2.311474e-22
34	8082478	8068974	NM_003274	TRAPPC10	0.803291	6.407177e-25	1.110172e-20	3.265211e-22
35	8082478	7919856	NM_181746	LASS2	0.802640	7.462575e-25	1.293040e-20	3.694401e-22
36	8082478	7948744	NM_198335	GANAB	0.802214	8.241556e-25	1.428014e-20	3.966707e-22
37	8082478	8158783	NM_005085	NUP214	0.801855	8.959174e-25	1.552356e-20	4.195557e-22
38	8082478	8018922	NM_004762	CYTH1	0.801181	1.047802e-24	1.815526e-20	4.777701e-22
39	8082478	8133434	NM_022170	EIF4H	0.800092	1.347415e-24	2.334666e-20	5.986324e-22
40	8082478	8006392	NM_002815	PSMD11	0.799702	1.473723e-24	2.553520e-20	6.383800e-22
41	8082478	8015955	NM_020218	ATXN7L3	0.799476	1.552022e-24	2.689189e-20	6.558998e-22
42	8082478	7939767	NM_003682	MADD	0.798801	1.811646e-24	3.139039e-20	7.473902e-22
43	8082478	7948814	NM_001079559	HNRNPUL2	0.798401	1.984712e-24	3.438911e-20	7.997468e-22
44	8082478	7945132	NM_002017	FLI1	0.797251	2.577748e-24	4.466464e-20	1.015106e-21
45	8082478	8093685	NM_002111	HTT	0.796965	2.750541e-24	4.765862e-20	1.059081e-21
46	8082478	8053388	NM_006464	TGOLN2	0.796641	2.959544e-24	5.128002e-20	1.114783e-21
47	8082478	7987840	NM_015289	VPS39	0.795751	3.616365e-24	6.266075e-20	1.333207e-21
48	8082478	8172914	NM_031407	HUWE1	0.795149	4.139094e-24	7.171808e-20	1.494127e-21
49	8082478	7915504	NM_022821	ELOVL1	0.795091	4.193287e-24	7.265709e-20	1.482798e-21
50	8082478	8053909	NM_014014	SNRNP200	0.794793	4.482456e-24	7.766752e-20	1.553350e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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