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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 14772.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
14772 7948744 NM_198335 GANAB link to infopage glucosidase, alpha; neutral AB

Fetching correlation data, please wait...
Getting list of correlations for id 14772.
Getting list of p-values for id 14772.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.120 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7948744 7956166 NM_015292 ESYT1 link to infopage 0.852948 7.616598e-31 1.319728e-26 1.319728e-26
2 7948744 8064351 NM_177559 CSNK2A1 link to infopage 0.848462 3.176129e-30 5.503279e-26 2.751639e-26
3 7948744 8011141 NM_006445 PRPF8 link to infopage 0.847372 4.461180e-30 7.729887e-26 2.576629e-26
4 7948744 8030881 NM_014225 PPP2R1A link to infopage 0.843477 1.471637e-29 2.549906e-25 6.374765e-26
5 7948744 8053909 NM_014014 SNRNP200 link to infopage 0.835500 1.536888e-28 2.662965e-24 5.325931e-25
6 7948744 8062349 NM_002951 RPN2 link to infopage 0.823275 4.432836e-27 7.680776e-23 1.280129e-23
7 7948744 7904254 NM_000701 ATP1A1 link to infopage 0.821921 6.330738e-27 1.096927e-22 1.567038e-23
8 7948744 8013696 NM_014680 KIAA0100 link to infopage 0.821857 6.438813e-27 1.115653e-22 1.394566e-23
9 7948744 7952557 NM_003139 SRPR link to infopage 0.820910 8.244673e-27 1.428555e-22 1.587283e-23
10 7948744 7903619 NM_006513 SARS link to infopage 0.819173 1.293272e-26 2.240853e-22 2.240853e-23
11 7948744 8136869 NM_032982 CASP2 link to infopage 0.816884 2.322927e-26 4.024936e-22 3.659033e-23
12 7948744 7948696 NM_004739 MTA2 link to infopage 0.812293 7.338488e-26 1.271540e-21 1.059616e-22
13 7948744 8016099 NM_004247 EFTUD2 link to infopage 0.810769 1.067850e-25 1.850264e-21 1.423280e-22
14 7948744 8051075 NM_001521 GTF3C2 link to infopage 0.810513 1.136953e-25 1.969999e-21 1.407142e-22
15 7948744 8093685 NM_002111 HTT link to infopage 0.809049 1.623655e-25 2.813307e-21 1.875538e-22
16 7948744 8032730 NM_001961 EEF2 link to infopage 0.807803 2.194106e-25 3.801727e-21 2.376080e-22
17 7948744 8064522 NM_174856 IDH3B link to infopage 0.807644 2.279325e-25 3.949387e-21 2.323169e-22
18 7948744 7993680 BC050464 C16orf62 link to infopage 0.807409 2.411941e-25 4.179171e-21 2.321761e-22
19 7948744 7913256 NM_005216 DDOST link to infopage 0.805541 3.767944e-25 6.528717e-21 3.436167e-22
20 7948744 8009164 NM_005828 DCAF7 link to infopage 0.805368 3.926245e-25 6.803004e-21 3.401502e-22
21 7948744 8099340 NM_017491 WDR1 link to infopage 0.805285 4.004262e-25 6.938184e-21 3.303897e-22
22 7948744 7941709 NM_002896 RBM4 link to infopage 0.803908 5.543463e-25 9.605159e-21 4.365981e-22
23 7948744 8117995 NM_178014 TUBB link to infopage 0.802428 7.840331e-25 1.358494e-20 5.906496e-22
24 7948744 8177858 NM_178014 TUBB link to infopage 0.802428 7.840331e-25 1.358494e-20 5.660392e-22
25 7948744 8179174 NM_178014 TUBB link to infopage 0.802428 7.840331e-25 1.358494e-20 5.433977e-22
26 7948744 8160914 NM_007126 VCP link to infopage 0.802257 8.159397e-25 1.413779e-20 5.437611e-22
27 7948744 8082478 NM_016128 COPG link to infopage 0.802214 8.241556e-25 1.428014e-20 5.288942e-22
28 7948744 8018600 NM_014230 SRP68 link to infopage 0.802170 8.327387e-25 1.442886e-20 5.153165e-22
29 7948744 7912198 NM_001428 ENO1 link to infopage 0.801164 1.051921e-24 1.822663e-20 6.285044e-22
30 7948744 8133434 NM_022170 EIF4H link to infopage 0.800561 1.209286e-24 2.095330e-20 6.984433e-22
31 7948744 8109368 NM_005754 G3BP1 link to infopage 0.799023 1.721950e-24 2.983623e-20 9.624590e-22
32 7948744 7948192 NM_003146 SSRP1 link to infopage 0.798509 1.936502e-24 3.355377e-20 1.048555e-21
33 7948744 7997099 NM_012426 SF3B3 link to infopage 0.797908 2.220709e-24 3.847822e-20 1.166007e-21
34 7948744 8157283 NM_004697 PRPF4 link to infopage 0.797642 2.358938e-24 4.087332e-20 1.202156e-21
35 7948744 8006392 NM_002815 PSMD11 link to infopage 0.796009 3.412129e-24 5.912195e-20 1.689199e-21
36 7948744 8110803 NM_030782 CLPTM1L link to infopage 0.795638 3.709034e-24 6.426642e-20 1.785178e-21
37 7948744 8027621 NM_000175 GPI link to infopage 0.795334 3.970431e-24 6.879567e-20 1.859342e-21
38 7948744 7955908 NM_005337 NCKAP1L link to infopage 0.795216 4.076912e-24 7.064065e-20 1.858964e-21
39 7948744 8007715 NM_021079 NMT1 link to infopage 0.795041 4.239987e-24 7.346626e-20 1.883750e-21
40 7948744 7953351 NM_014865 NCAPD2 link to infopage 0.794068 5.269050e-24 9.129682e-20 2.282421e-21
41 7948744 7939767 NM_003682 MADD link to infopage 0.792887 6.847103e-24 1.186398e-19 2.893653e-21
42 7948744 7990211 NM_000520 HEXA link to infopage 0.792730 7.088545e-24 1.228232e-19 2.924362e-21
43 7948744 8138773 NM_022170 EIF4H link to infopage 0.791455 9.386796e-24 1.626450e-19 3.782442e-21
44 7948744 7940051 NM_015457 ZDHHC5 link to infopage 0.791258 9.801138e-24 1.698243e-19 3.859644e-21
45 7948744 7960594 NM_001273 CHD4 link to infopage 0.789500 1.438039e-23 2.491690e-19 5.537089e-21
46 7948744 8143781 NM_024711 GIMAP6 link to infopage 0.788852 1.654933e-23 2.867502e-19 6.233701e-21
47 7948744 7949496 NM_005507 CFL1 link to infopage 0.788276 1.874243e-23 3.247501e-19 6.909576e-21
48 7948744 7972946 NM_007368 RASA3 link to infopage 0.787053 2.437682e-23 4.223771e-19 8.799523e-21
49 7948744 7929831 NM_017902 HIF1AN link to infopage 0.784878 3.874374e-23 6.713129e-19 1.370026e-20
50 7948744 8147447 NM_014754 PTDSS1 link to infopage 0.784559 4.145369e-23 7.182681e-19 1.436536e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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