[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
11607	7948192	NM_003146	SSRP1		structure specific recognition protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 11607.
Getting list of p-values for id 11607.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.186 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7948192	7948696	NM_004739	MTA2	0.878125	9.356364e-35	1.621177e-30	1.621177e-30
2	7948192	8032730	NM_001961	EEF2	0.853190	7.042774e-31	1.220301e-26	6.101507e-27
3	7948192	8032576	NM_198969	AES	0.840352	3.746451e-29	6.491476e-25	2.163825e-25
4	7948192	7972946	NM_007368	RASA3	0.827488	1.433901e-27	2.484521e-23	6.211302e-24
5	7948192	7904974	NR_003242	C1orf152	0.821989	6.219596e-27	1.077669e-22	2.155339e-23
6	7948192	8143781	NM_024711	GIMAP6	0.819635	1.147763e-26	1.988730e-22	3.314549e-23
7	7948192	8019250	NM_000918	P4HB	0.816718	2.422946e-26	4.198238e-22	5.997483e-23
8	7948192	8025697	NM_012218	ILF3	0.814156	4.619848e-26	8.004811e-22	1.000601e-22
9	7948192	7924733	NM_001618	PARP1	0.800235	1.303756e-24	2.259018e-20	2.510020e-21
10	7948192	7948744	NM_198335	GANAB	0.798509	1.936502e-24	3.355377e-20	3.355377e-21
11	7948192	7904254	NM_000701	ATP1A1	0.798276	2.042438e-24	3.538932e-20	3.217211e-21
12	7948192	8132819	NM_006060	IKZF1	0.797963	2.193278e-24	3.800293e-20	3.166911e-21
13	7948192	7951838	NM_003904	ZNF259	0.797446	2.466545e-24	4.273782e-20	3.287525e-21
14	7948192	7920515	NM_017582	UBE2Q1	0.796065	3.369186e-24	5.837788e-20	4.169849e-21
15	7948192	8085431	NM_024923	NUP210	0.794750	4.525176e-24	7.840773e-20	5.227182e-21
16	7948192	8031913	NM_005762	TRIM28	0.794471	4.816263e-24	8.345140e-20	5.215712e-21
17	7948192	8164644	NM_033387	FAM78A	0.793264	6.298734e-24	1.091382e-19	6.419892e-21
18	7948192	7981032	NM_020414	DDX24	0.792139	8.075664e-24	1.399270e-19	7.773724e-21
19	7948192	7939265	NM_024662	NAT10	0.791134	1.007096e-23	1.744996e-19	9.184188e-21
20	7948192	8130505	NM_003379	EZR	0.789225	1.526622e-23	2.645178e-19	1.322589e-20
21	7948192	8051075	NM_001521	GTF3C2	0.785951	3.085015e-23	5.345405e-19	2.545431e-20
22	7948192	8066668	NM_020967	NCOA5	0.785119	3.681598e-23	6.379104e-19	2.899593e-20
23	7948192	8048120	NM_004044	ATIC	0.782165	6.854311e-23	1.187646e-18	5.163680e-20
24	7948192	8026106	NM_004343	CALR	0.781705	7.545102e-23	1.307340e-18	5.447249e-20
25	7948192	8084439	NM_182917	EIF4G1	0.777726	1.713021e-22	2.968151e-18	1.187261e-19
26	7948192	8052803	NM_014911	AAK1	0.777142	1.929318e-22	3.342930e-18	1.285742e-19
27	7948192	8029884	NR_027280	SAE1	0.777004	1.984482e-22	3.438512e-18	1.273523e-19
28	7948192	8012257	NM_000546	TP53	0.776490	2.202693e-22	3.816606e-18	1.363074e-19
29	7948192	8109368	NM_005754	G3BP1	0.776451	2.220067e-22	3.846711e-18	1.326452e-19
30	7948192	7913256	NM_005216	DDOST	0.774871	3.053723e-22	5.291186e-18	1.763729e-19
31	7948192	8110803	NM_030782	CLPTM1L	0.774277	3.440535e-22	5.961416e-18	1.923037e-19
32	7948192	8024019	NM_002819	PTBP1	0.773986	3.647051e-22	6.319245e-18	1.974764e-19
33	7948192	7944179	NM_000733	CD3E	0.773841	3.753788e-22	6.504188e-18	1.970966e-19
34	7948192	8108080	NM_015288	PHF15	0.771356	6.150060e-22	1.065621e-17	3.134179e-19
35	7948192	8001666	NM_001896	CSNK2A2	0.771163	6.389782e-22	1.107157e-17	3.163307e-19
36	7948192	7956166	NM_015292	ESYT1	0.771082	6.492663e-22	1.124984e-17	3.124955e-19
37	7948192	8002919	NM_001130089	KARS	0.770704	6.993854e-22	1.211825e-17	3.275203e-19
38	7948192	8114320	NM_006805	HNRNPA0	0.770484	7.303310e-22	1.265445e-17	3.330117e-19
39	7948192	8086148	NM_000992	RPL29	0.769102	9.573517e-22	1.658803e-17	4.253342e-19
40	7948192	8007715	NM_021079	NMT1	0.769007	9.752447e-22	1.689807e-17	4.224516e-19
41	7948192	7912257	NM_001009566	CLSTN1	0.767669	1.265093e-21	2.192027e-17	5.346407e-19
42	7948192	7997099	NM_012426	SF3B3	0.767351	1.345364e-21	2.331111e-17	5.550265e-19
43	7948192	8006392	NM_002815	PSMD11	0.765427	1.948799e-21	3.376684e-17	7.852754e-19
44	7948192	8174692	NM_145799	SEPT6	0.763079	3.048518e-21	5.282167e-17	1.200493e-18
45	7948192	8062349	NM_002951	RPN2	0.762100	3.667965e-21	6.355483e-17	1.412330e-18
46	7948192	8018600	NM_014230	SRP68	0.761937	3.781873e-21	6.552851e-17	1.424533e-18
47	7948192	7953200	NM_001759	CCND2	0.761692	3.960963e-21	6.863161e-17	1.460247e-18
48	7948192	8042720	NM_006429	CCT7	0.761150	4.385213e-21	7.598259e-17	1.582971e-18
49	7948192	8053890	NM_020151	STARD7	0.759052	6.487571e-21	1.124101e-16	2.294085e-18
50	7948192	8093685	NM_002111	HTT	0.757417	8.780228e-21	1.521350e-16	3.042700e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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