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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
12300 8012257 NM_000546 TP53 link to infopage tumor protein p53

Fetching correlation data, please wait...
Getting list of correlations for id 12300.
Getting list of p-values for id 12300.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.568 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8012257 7948696 NM_004739 MTA2 link to infopage 0.802508 7.695810e-25 1.333453e-20 1.333453e-20
2 8012257 8084439 NM_182917 EIF4G1 link to infopage 0.784435 4.255203e-23 7.372991e-19 3.686495e-19
3 8012257 8031913 NM_005762 TRIM28 link to infopage 0.777752 1.703922e-22 2.952385e-18 9.841285e-19
4 8012257 7948192 NM_003146 SSRP1 link to infopage 0.776490 2.202693e-22 3.816606e-18 9.541516e-19
5 8012257 8007715 NM_021079 NMT1 link to infopage 0.769155 9.474849e-22 1.641707e-17 3.283414e-18
6 8012257 7939265 NM_024662 NAT10 link to infopage 0.767053 1.425133e-21 2.469329e-17 4.115548e-18
7 8012257 7948744 NM_198335 GANAB link to infopage 0.763276 2.936603e-21 5.088252e-17 7.268932e-18
8 8012257 8030881 NM_014225 PPP2R1A link to infopage 0.761278 4.280925e-21 7.417559e-17 9.271949e-18
9 8012257 8009164 NM_005828 DCAF7 link to infopage 0.756915 9.628614e-21 1.668350e-16 1.853722e-17
10 8012257 8164644 NM_033387 FAM78A link to infopage 0.754757 1.428823e-20 2.475722e-16 2.475722e-17
11 8012257 8026272 NM_004843 IL27RA link to infopage 0.750650 2.994509e-20 5.188585e-16 4.716896e-17
12 8012257 7972946 NM_007368 RASA3 link to infopage 0.748128 4.683566e-20 8.115214e-16 6.762678e-17
13 8012257 8158446 NM_015354 NUP188 link to infopage 0.744543 8.766057e-20 1.518895e-15 1.168381e-16
14 8012257 8108080 NM_015288 PHF15 link to infopage 0.742184 1.316552e-19 2.281189e-15 1.629421e-16
15 8012257 8026106 NM_004343 CALR link to infopage 0.739906 1.941897e-19 3.364725e-15 2.243150e-16
16 8012257 8085431 NM_024923 NUP210 link to infopage 0.739546 2.064004e-19 3.576300e-15 2.235187e-16
17 8012257 7966938 NM_006836 GCN1L1 link to infopage 0.737906 2.722478e-19 4.717238e-15 2.774846e-16
18 8012257 7904974 NR_003242 C1orf152 link to infopage 0.737517 2.906180e-19 5.035539e-15 2.797521e-16
19 8012257 8132819 NM_006060 IKZF1 link to infopage 0.735042 4.393554e-19 7.612712e-15 4.006690e-16
20 8012257 8025697 NM_012218 ILF3 link to infopage 0.734153 5.090440e-19 8.820206e-15 4.410103e-16
21 8012257 7912412 NM_004958 MTOR link to infopage 0.732599 6.575249e-19 1.139293e-14 5.425206e-16
22 8012257 8032576 NM_198969 AES link to infopage 0.732458 6.730097e-19 1.166124e-14 5.300563e-16
23 8012257 8028916 NM_004596 SNRPA link to infopage 0.730077 9.926218e-19 1.719916e-14 7.477895e-16
24 8012257 8032730 NM_001961 EEF2 link to infopage 0.729301 1.125579e-18 1.950291e-14 8.126210e-16
25 8012257 8145201 NM_021174 KIAA1967 link to infopage 0.728666 1.247201e-18 2.161025e-14 8.644102e-16
26 8012257 7940372 NM_024092 TMEM109 link to infopage 0.725661 2.018859e-18 3.498078e-14 1.345415e-15
27 8012257 8099051 NM_003703 NOP14 link to infopage 0.725551 2.054547e-18 3.559913e-14 1.318486e-15
28 8012257 7939767 NM_003682 MADD link to infopage 0.725255 2.153426e-18 3.731241e-14 1.332586e-15
29 8012257 8115147 NM_001025159 CD74 link to infopage 0.722652 3.249490e-18 5.630392e-14 1.941514e-15
30 8012257 8025895 NM_002743 PRKCSH link to infopage 0.721563 3.854198e-18 6.678169e-14 2.226056e-15
31 8012257 7964064 NM_004077 CS link to infopage 0.719951 4.955048e-18 8.585611e-14 2.769552e-15
32 8012257 8133275 NM_172020 POM121 link to infopage 0.719346 5.442561e-18 9.430325e-14 2.946977e-15
33 8012257 8013486 NM_015276 USP22 link to infopage 0.718931 5.803540e-18 1.005579e-13 3.047210e-15
34 8012257 8114320 NM_006805 HNRNPA0 link to infopage 0.718565 6.140692e-18 1.063998e-13 3.129405e-15
35 8012257 8015460 NM_001096 ACLY link to infopage 0.718541 6.163331e-18 1.067920e-13 3.051201e-15
36 8012257 8143781 NM_024711 GIMAP6 link to infopage 0.718525 6.179166e-18 1.070664e-13 2.974067e-15
37 8012257 7913256 NM_005216 DDOST link to infopage 0.717392 7.356170e-18 1.274604e-13 3.444875e-15
38 8012257 8027621 NM_000175 GPI link to infopage 0.717053 7.749212e-18 1.342706e-13 3.533437e-15
39 8012257 8010161 NM_006640 SEPT9 link to infopage 0.716009 9.091912e-18 1.575356e-13 4.039373e-15
40 8012257 8177858 NM_178014 TUBB link to infopage 0.715609 9.663068e-18 1.674320e-13 4.185799e-15
41 8012257 8117995 NM_178014 TUBB link to infopage 0.715609 9.663068e-18 1.674320e-13 4.083707e-15
42 8012257 8179174 NM_178014 TUBB link to infopage 0.715609 9.663068e-18 1.674320e-13 3.986476e-15
43 8012257 7963614 NM_000889 ITGB7 link to infopage 0.715132 1.039207e-17 1.800635e-13 4.187523e-15
44 8012257 8019765 NM_004309 ARHGDIA link to infopage 0.714753 1.100724e-17 1.907224e-13 4.334600e-15
45 8012257 7953351 NM_014865 NCAPD2 link to infopage 0.714035 1.227457e-17 2.126815e-13 4.726256e-15
46 8012257 8024019 NM_002819 PTBP1 link to infopage 0.713252 1.381690e-17 2.394054e-13 5.204465e-15
47 8012257 8133690 NM_005918 MDH2 link to infopage 0.712896 1.457848e-17 2.526013e-13 5.374497e-15
48 8012257 7912385 NM_001001998 EXOSC10 link to infopage 0.712496 1.548273e-17 2.682693e-13 5.588943e-15
49 8012257 7956166 NM_015292 ESYT1 link to infopage 0.711472 1.805484e-17 3.128363e-13 6.384413e-15
50 8012257 8051075 NM_001521 GTF3C2 link to infopage 0.711054 1.921987e-17 3.330227e-13 6.660454e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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