[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14805	8143781	NM_024711	GIMAP6		GTPase, IMAP family member 6

Fetching correlation data, please wait...
Getting list of correlations for id 14805.
Getting list of p-values for id 14805.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.130 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8143781	8109368	NM_005754	G3BP1	0.842203	2.159247e-29	3.741327e-25	3.741327e-25
2	8143781	7948696	NM_004739	MTA2	0.828704	1.029471e-27	1.783765e-23	8.918825e-24
3	8143781	7914563	NM_003680	YARS	0.825538	2.426900e-27	4.205090e-23	1.401697e-23
4	8143781	8002919	NM_001130089	KARS	0.825251	2.620542e-27	4.540614e-23	1.135153e-23
5	8143781	8020806	NM_017831	RNF125	0.823774	3.884982e-27	6.731509e-23	1.346302e-23
6	8143781	8062349	NM_002951	RPN2	0.823720	3.940113e-27	6.827035e-23	1.137839e-23
7	8143781	7948192	NM_003146	SSRP1	0.819635	1.147763e-26	1.988730e-22	2.841042e-23
8	8143781	8128956	NM_002037	FYN	0.817277	2.101685e-26	3.641590e-22	4.551987e-23
9	8143781	7974835	NM_006255	PRKCH	0.813608	5.295828e-26	9.176080e-22	1.019564e-22
10	8143781	7990211	NM_000520	HEXA	0.813329	5.676362e-26	9.835433e-22	9.835433e-23
11	8143781	7903619	NM_006513	SARS	0.810485	1.144777e-25	1.983555e-21	1.803232e-22
12	8143781	8168280	NM_001145408	NONO	0.807180	2.547890e-25	4.414728e-21	3.678940e-22
13	8143781	8007715	NM_021079	NMT1	0.804372	4.969577e-25	8.610786e-21	6.623682e-22
14	8143781	7913256	NM_005216	DDOST	0.803964	5.470376e-25	9.478521e-21	6.770372e-22
15	8143781	8042720	NM_006429	CCT7	0.803381	6.273657e-25	1.087036e-20	7.246910e-22
16	8143781	8088247	NM_001128615	ARHGEF3	0.803176	6.582035e-25	1.140469e-20	7.127932e-22
17	8143781	8006392	NM_002815	PSMD11	0.801290	1.021638e-24	1.770193e-20	1.041290e-21
18	8143781	7981032	NM_020414	DDX24	0.800311	1.280961e-24	2.219521e-20	1.233067e-21
19	8143781	8130505	NM_003379	EZR	0.800029	1.367122e-24	2.368813e-20	1.246744e-21
20	8143781	7908732	NM_018085	IPO9	0.798243	2.057453e-24	3.564949e-20	1.782475e-21
21	8143781	8018600	NM_014230	SRP68	0.798079	2.135929e-24	3.700923e-20	1.762344e-21
22	8143781	8137252	NM_130759	GIMAP1	0.796297	3.197956e-24	5.541099e-20	2.518681e-21
23	8143781	7997099	NM_012426	SF3B3	0.795388	3.923415e-24	6.798101e-20	2.955696e-21
24	8143781	8048120	NM_004044	ATIC	0.794515	4.769003e-24	8.263251e-20	3.443021e-21
25	8143781	8144184	NM_020728	ESYT2	0.794494	4.791738e-24	8.302644e-20	3.321058e-21
26	8143781	8171516	NM_002893	RBBP7	0.793879	5.495044e-24	9.521262e-20	3.662024e-21
27	8143781	7904287	NM_001767	CD2	0.793603	5.842038e-24	1.012250e-19	3.749074e-21
28	8143781	8032730	NM_001961	EEF2	0.791345	9.616207e-24	1.666200e-19	5.950715e-21
29	8143781	8114455	NM_004134	HSPA9	0.790631	1.124093e-23	1.947716e-19	6.716261e-21
30	8143781	8162313	NM_013417	IARS	0.790249	1.221868e-23	2.117130e-19	7.057101e-21
31	8143781	8066668	NM_020967	NCOA5	0.789581	1.413206e-23	2.448663e-19	7.898912e-21
32	8143781	8104166	NM_004168	SDHA	0.789575	1.414942e-23	2.451669e-19	7.661467e-21
33	8143781	7948744	NM_198335	GANAB	0.788852	1.654933e-23	2.867502e-19	8.689401e-21
34	8143781	8132819	NM_006060	IKZF1	0.787419	2.254089e-23	3.905661e-19	1.148724e-20
35	8143781	7963614	NM_000889	ITGB7	0.785712	3.246026e-23	5.624389e-19	1.606968e-20
36	8143781	7948997	NM_015459	ATL3	0.784871	3.880464e-23	6.723680e-19	1.867689e-20
37	8143781	7927981	NM_003171	SUPV3L1	0.784824	3.919060e-23	6.790556e-19	1.835285e-20
38	8143781	7967149	NM_016237	ANAPC5	0.784024	4.641194e-23	8.041796e-19	2.116262e-20
39	8143781	8051075	NM_001521	GTF3C2	0.782831	5.963540e-23	1.033303e-18	2.649494e-20
40	8143781	8073192	NM_006003	UQCRFS1	0.782810	5.989599e-23	1.037818e-18	2.594544e-20
41	8143781	8110803	NM_030782	CLPTM1L	0.781988	7.111752e-23	1.232253e-18	3.005496e-20
42	8143781	8003089	NM_003791	MBTPS1	0.781518	7.843472e-23	1.359038e-18	3.235806e-20
43	8143781	7904254	NM_000701	ATP1A1	0.779971	1.080739e-22	1.872596e-18	4.354875e-20
44	8143781	8164177	NM_001006617	MAPKAP1	0.779622	1.161324e-22	2.012226e-18	4.573242e-20
45	8143781	8075182	NM_005080	XBP1	0.779028	1.312238e-22	2.273715e-18	5.052700e-20
46	8143781	8025697	NM_012218	ILF3	0.776993	1.988881e-22	3.446134e-18	7.491596e-20
47	8143781	7972946	NM_007368	RASA3	0.776827	2.056901e-22	3.563993e-18	7.582963e-20
48	8143781	7939265	NM_024662	NAT10	0.776704	2.108912e-22	3.654113e-18	7.612734e-20
49	8143781	8041000	NM_007266	GPN1	0.776263	2.306024e-22	3.995647e-18	8.154383e-20
50	8143781	8032576	NM_198969	AES	0.775948	2.457992e-22	4.258962e-18	8.517924e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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