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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 12769.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
12769 8025697 NM_012218 ILF3 link to infopage interleukin enhancer binding factor 3, 90kDa

Fetching correlation data, please wait...
Getting list of correlations for id 12769.
Getting list of p-values for id 12769.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.112 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8025697 8172876 NM_006306 SMC1A link to infopage 0.874335 4.099238e-34 7.102750e-30 7.102750e-30
2 8025697 8087271 NM_017730 QRICH1 link to infopage 0.856002 2.803262e-31 4.857211e-27 2.428606e-27
3 8025697 8074647 NM_058004 PI4KA link to infopage 0.850270 1.795909e-30 3.111772e-26 1.037257e-26
4 8025697 8158317 NM_001130438 SPTAN1 link to infopage 0.844464 1.091065e-29 1.890488e-25 4.726221e-26
5 8025697 7944223 NM_005933 MLL link to infopage 0.840738 3.341314e-29 5.789496e-25 1.157899e-25
6 8025697 8174692 NM_145799 SEPT6 link to infopage 0.839486 4.836411e-29 8.380049e-25 1.396675e-25
7 8025697 7997099 NM_012426 SF3B3 link to infopage 0.837494 8.651520e-29 1.499049e-24 2.141498e-25
8 8025697 7975725 NM_019589 YLPM1 link to infopage 0.835184 1.682069e-28 2.914520e-24 3.643150e-25
9 8025697 8024019 NM_002819 PTBP1 link to infopage 0.828616 1.054410e-27 1.826976e-23 2.029973e-24
10 8025697 8158446 NM_015354 NUP188 link to infopage 0.825139 2.700543e-27 4.679231e-23 4.679231e-24
11 8025697 8158829 NM_013318 BAT2L1 link to infopage 0.820335 9.575187e-27 1.659093e-22 1.508266e-23
12 8025697 7999614 NM_006985 NPIP link to infopage 0.818510 1.533560e-26 2.657199e-22 2.214333e-23
13 8025697 7999634 NM_006985 NPIP link to infopage 0.818402 1.576705e-26 2.731956e-22 2.101505e-23
14 8025697 8084717 NM_173216 ST6GAL1 link to infopage 0.817469 2.001288e-26 3.467632e-22 2.476880e-23
15 8025697 8053909 NM_014014 SNRNP200 link to infopage 0.817279 2.100949e-26 3.640315e-22 2.426877e-23
16 8025697 7976876 NM_001376 DYNC1H1 link to infopage 0.815652 3.172699e-26 5.497336e-22 3.435835e-23
17 8025697 8052803 NM_014911 AAK1 link to infopage 0.815201 3.554764e-26 6.159340e-22 3.623141e-23
18 8025697 7948192 NM_003146 SSRP1 link to infopage 0.814156 4.619848e-26 8.004811e-22 4.447117e-23
19 8025697 8015460 NM_001096 ACLY link to infopage 0.810338 1.186387e-25 2.055653e-21 1.081922e-22
20 8025697 7898833 NM_001009999 KDM1A link to infopage 0.808554 1.830457e-25 3.171633e-21 1.585817e-22
21 8025697 8172914 NM_031407 HUWE1 link to infopage 0.807371 2.433722e-25 4.216910e-21 2.008053e-22
22 8025697 8085665 NM_015150 RFTN1 link to infopage 0.805695 3.632309e-25 6.293701e-21 2.860773e-22
23 8025697 8134470 NM_003496 TRRAP link to infopage 0.805357 3.936335e-25 6.820488e-21 2.965429e-22
24 8025697 8179504 NM_005104 BRD2 link to infopage 0.804025 5.392218e-25 9.343096e-21 3.892957e-22
25 8025697 8002729 NR_027264 GLG1 link to infopage 0.799026 1.720752e-24 2.981547e-20 1.192619e-21
26 8025697 8016077 NM_001002909 GPATCH8 link to infopage 0.797999 2.175180e-24 3.768935e-20 1.449590e-21
27 8025697 7956166 NM_015292 ESYT1 link to infopage 0.797922 2.213386e-24 3.835135e-20 1.420420e-21
28 8025697 8118580 NM_005104 BRD2 link to infopage 0.796873 2.807867e-24 4.865192e-20 1.737569e-21
29 8025697 7948696 NM_004739 MTA2 link to infopage 0.796530 3.034354e-24 5.257626e-20 1.812974e-21
30 8025697 8052798 NM_014911 AAK1 link to infopage 0.796393 3.129254e-24 5.422059e-20 1.807353e-21
31 8025697 7972946 NM_007368 RASA3 link to infopage 0.795778 3.594582e-24 6.228333e-20 2.009140e-21
32 8025697 7918517 NM_024102 WDR77 link to infopage 0.794401 4.891583e-24 8.475646e-20 2.648639e-21
33 8025697 8069910 NM_020706 SFRS15 link to infopage 0.794008 5.339248e-24 9.251316e-20 2.803429e-21
34 8025697 7924760 NM_002221 ITPKB link to infopage 0.792723 7.100314e-24 1.230271e-19 3.618445e-21
35 8025697 8139977 NM_001013739 STAG3L3 link to infopage 0.792172 8.017831e-24 1.389250e-19 3.969284e-21
36 8025697 8011141 NM_006445 PRPF8 link to infopage 0.791952 8.416266e-24 1.458286e-19 4.050796e-21
37 8025697 8140196 NM_001025202 STAG3L2 link to infopage 0.789346 1.487078e-23 2.576660e-19 6.963945e-21
38 8025697 8109528 NM_001037332 CYFIP2 link to infopage 0.787983 1.996586e-23 3.459485e-19 9.103909e-21
39 8025697 8003089 NM_003791 MBTPS1 link to infopage 0.787979 1.998266e-23 3.462396e-19 8.877937e-21
40 8025697 8132819 NM_006060 IKZF1 link to infopage 0.787548 2.192176e-23 3.798383e-19 9.495958e-21
41 8025697 7939767 NM_003682 MADD link to infopage 0.786853 2.544338e-23 4.408574e-19 1.075262e-20
42 8025697 8136401 NM_015135 NUP205 link to infopage 0.783720 4.947799e-23 8.573051e-19 2.041203e-20
43 8025697 8008213 NM_007067 MYST2 link to infopage 0.782990 5.768074e-23 9.994342e-19 2.324266e-20
44 8025697 8019250 NM_000918 P4HB link to infopage 0.782636 6.211164e-23 1.076208e-18 2.445928e-20
45 8025697 8133610 NM_001013739 STAG3L3 link to infopage 0.782023 7.061276e-23 1.223507e-18 2.718905e-20
46 8025697 8177026 NM_178129 P2RY8 link to infopage 0.781977 7.129186e-23 1.235274e-18 2.685378e-20
47 8025697 8171136 NM_178129 P2RY8 link to infopage 0.781977 7.129186e-23 1.235274e-18 2.628243e-20
48 8025697 7908732 NM_018085 IPO9 link to infopage 0.781411 8.019616e-23 1.389559e-18 2.894914e-20
49 8025697 8143441 BC012493 KIAA1147 link to infopage 0.778796 1.376318e-22 2.384747e-18 4.866830e-20
50 8025697 7975747 NM_001933 DLST link to infopage 0.778509 1.459681e-22 2.529189e-18 5.058378e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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