[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14061	7976876	NM_001376	DYNC1H1		dynein, cytoplasmic 1, heavy chain 1

Fetching correlation data, please wait...
Getting list of correlations for id 14061.
Getting list of p-values for id 14061.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.178 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7976876	8172914	NM_031407	HUWE1	0.906129	2.815261e-40	4.878002e-36	4.878002e-36
2	7976876	8053909	NM_014014	SNRNP200	0.874399	3.999931e-34	6.930680e-30	3.465340e-30
3	7976876	8093685	NM_002111	HTT	0.872720	7.583285e-34	1.313956e-29	4.379852e-30
4	7976876	8005903	NM_003170	SUPT6H	0.871712	1.108425e-33	1.920567e-29	4.801418e-30
5	7976876	7913001	NM_020765	UBR4	0.860353	6.480266e-32	1.122836e-27	2.245671e-28
6	7976876	8070988	NM_003906	MCM3AP	0.852185	9.741525e-31	1.687914e-26	2.813190e-27
7	7976876	8068974	NM_003274	TRAPPC10	0.848618	3.023889e-30	5.239493e-26	7.484990e-27
8	7976876	8158783	NM_005085	NUP214	0.848091	3.566540e-30	6.179745e-26	7.724681e-27
9	7976876	7900235	NM_012090	MACF1	0.844572	1.055827e-29	1.829431e-25	2.032701e-26
10	7976876	7960594	NM_001273	CHD4	0.841523	2.645925e-29	4.584594e-25	4.584594e-26
11	7976876	8074647	NM_058004	PI4KA	0.839792	4.420424e-29	7.659268e-25	6.962971e-26
12	7976876	8002729	NR_027264	GLG1	0.839591	4.689798e-29	8.126012e-25	6.771677e-26
13	7976876	7955908	NM_005337	NCKAP1L	0.838471	6.511072e-29	1.128173e-24	8.678257e-26
14	7976876	8172876	NM_006306	SMC1A	0.837803	7.909327e-29	1.370449e-24	9.788923e-26
15	7976876	8160914	NM_007126	VCP	0.837048	9.846432e-29	1.706091e-24	1.137394e-25
16	7976876	8011542	NM_015113	ZZEF1	0.836331	1.210970e-28	2.098248e-24	1.311405e-25
17	7976876	8013696	NM_014680	KIAA0100	0.835758	1.427281e-28	2.473050e-24	1.454735e-25
18	7976876	7952557	NM_003139	SRPR	0.832717	3.383294e-28	5.862233e-24	3.256796e-25
19	7976876	8110289	NM_022455	NSD1	0.830565	6.167050e-28	1.068565e-23	5.624025e-25
20	7976876	8179504	NM_005104	BRD2	0.828273	1.158151e-27	2.006728e-23	1.003364e-24
21	7976876	8009164	NM_005828	DCAF7	0.826499	1.873896e-27	3.246899e-23	1.546143e-24
22	7976876	7944223	NM_005933	MLL	0.821601	6.884500e-27	1.192877e-22	5.422170e-24
23	7976876	7907310	NM_015172	BAT2L2	0.820884	8.300672e-27	1.438258e-22	6.253294e-24
24	7976876	8164607	NM_015033	FNBP1	0.817169	2.160514e-26	3.743522e-22	1.559801e-23
25	7976876	8118580	NM_005104	BRD2	0.817055	2.223939e-26	3.853419e-22	1.541368e-23
26	7976876	8025697	NM_012218	ILF3	0.815652	3.172699e-26	5.497336e-22	2.114360e-23
27	7976876	8001693	NM_016284	CNOT1	0.815507	3.291002e-26	5.702319e-22	2.111970e-23
28	7976876	8134470	NM_003496	TRRAP	0.815498	3.298213e-26	5.714814e-22	2.041005e-23
29	7976876	8011141	NM_006445	PRPF8	0.815151	3.599163e-26	6.236269e-22	2.150438e-23
30	7976876	7989516	NM_003922	HERC1	0.812468	7.027984e-26	1.217739e-21	4.059129e-23
31	7976876	8022531	NM_000271	NPC1	0.810874	1.040695e-25	1.803212e-21	5.816814e-23
32	7976876	8012961	NM_006311	NCOR1	0.810288	1.201048e-25	2.081056e-21	6.503301e-23
33	7976876	7912412	NM_004958	MTOR	0.808494	1.857071e-25	3.217747e-21	9.750749e-23
34	7976876	7920810	NM_001037533	GON4L	0.808359	1.918910e-25	3.324895e-21	9.779103e-23
35	7976876	8173009	NM_015107	PHF8	0.808131	2.027054e-25	3.512277e-21	1.003508e-22
36	7976876	7947894	NM_198700	CELF1	0.806552	2.961692e-25	5.131725e-21	1.425479e-22
37	7976876	7975725	NM_019589	YLPM1	0.805809	3.534963e-25	6.125030e-21	1.655414e-22
38	7976876	8069910	NM_020706	SFRS15	0.805478	3.824972e-25	6.627530e-21	1.744087e-22
39	7976876	7944850	NM_032811	TBRG1	0.805185	4.100297e-25	7.104585e-21	1.821689e-22
40	7976876	7905700	NM_014847	UBAP2L	0.804868	4.419898e-25	7.658358e-21	1.914590e-22
41	7976876	7992692	NM_016333	SRRM2	0.804825	4.464393e-25	7.735454e-21	1.886696e-22
42	7976876	7958644	NM_170665	ATP2A2	0.804438	4.892810e-25	8.477771e-21	2.018517e-22
43	7976876	7939767	NM_003682	MADD	0.803937	5.505646e-25	9.539633e-21	2.218519e-22
44	7976876	7928369	NM_004922	SEC24C	0.802966	6.915095e-25	1.198179e-20	2.723133e-22
45	7976876	8075728	NM_002473	MYH9	0.802928	6.976110e-25	1.208751e-20	2.686112e-22
46	7976876	8172119	NM_004229	MED14	0.800171	1.322868e-24	2.292134e-20	4.982900e-22
47	7976876	8019250	NM_000918	P4HB	0.799711	1.470606e-24	2.548118e-20	5.421528e-22
48	7976876	8043791	NM_001134225	INPP4A	0.797845	2.252921e-24	3.903637e-20	8.132576e-22
49	7976876	8006850	NM_016507	CDK12	0.797486	2.444021e-24	4.234754e-20	8.642356e-22
50	7976876	8099340	NM_017491	WDR1	0.795104	4.181120e-24	7.244626e-20	1.448925e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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