[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12765	8172876	NM_006306	SMC1A		structural maintenance of chromosomes 1A

Fetching correlation data, please wait...
Getting list of correlations for id 12765.
Getting list of p-values for id 12765.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8172876	8025697	NM_012218	ILF3	0.874335	4.099238e-34	7.102750e-30	7.102750e-30
2	8172876	7955908	NM_005337	NCKAP1L	0.865342	1.136023e-32	1.968387e-28	9.841934e-29
3	8172876	8087271	NM_017730	QRICH1	0.858443	1.240191e-31	2.148880e-27	7.162932e-28
4	8172876	8002729	NR_027264	GLG1	0.857297	1.822130e-31	3.157205e-27	7.893012e-28
5	8172876	8053909	NM_014014	SNRNP200	0.852051	1.017223e-30	1.762543e-26	3.525086e-27
6	8172876	7975725	NM_019589	YLPM1	0.848717	2.931615e-30	5.079610e-26	8.466016e-27
7	8172876	8001693	NM_016284	CNOT1	0.846160	6.492193e-30	1.124902e-25	1.607003e-26
8	8172876	7977693	NM_020920	CHD8	0.842260	2.123130e-29	3.678748e-25	4.598435e-26
9	8172876	8016077	NM_001002909	GPATCH8	0.841901	2.363327e-29	4.094937e-25	4.549930e-26
10	8172876	7931728	NM_015155	LARP4B	0.841661	2.539109e-29	4.399515e-25	4.399515e-26
11	8172876	8074647	NM_058004	PI4KA	0.839044	5.507085e-29	9.542126e-25	8.674660e-26
12	8172876	8100902	NM_032217	ANKRD17	0.838726	6.044597e-29	1.047347e-24	8.727894e-26
13	8172876	8017776	NM_014877	HELZ	0.838386	6.675794e-29	1.156715e-24	8.897807e-26
14	8172876	7976876	NM_001376	DYNC1H1	0.837803	7.909327e-29	1.370449e-24	9.788923e-26
15	8172876	7997099	NM_012426	SF3B3	0.836544	1.138798e-28	1.973195e-24	1.315463e-25
16	8172876	8172119	NM_004229	MED14	0.836410	1.183727e-28	2.051044e-24	1.281902e-25
17	8172876	7921583	NM_001098398	COPA	0.834104	2.287337e-28	3.963269e-24	2.331335e-25
18	8172876	7898833	NM_001009999	KDM1A	0.832580	3.516486e-28	6.093015e-24	3.385008e-25
19	8172876	8018922	NM_004762	CYTH1	0.832042	4.088077e-28	7.083411e-24	3.728111e-25
20	8172876	7958644	NM_170665	ATP2A2	0.832023	4.109264e-28	7.120122e-24	3.560061e-25
21	8172876	8087874	NM_025222	WDR82	0.831943	4.203096e-28	7.282704e-24	3.467954e-25
22	8172876	8024019	NM_002819	PTBP1	0.830637	6.044517e-28	1.047334e-23	4.760607e-25
23	8172876	8160914	NM_007126	VCP	0.829417	8.466265e-28	1.466950e-23	6.378042e-25
24	8172876	8015460	NM_001096	ACLY	0.828851	9.888099e-28	1.713311e-23	7.138795e-25
25	8172876	8133504	NM_032999	GTF2I	0.828737	1.020196e-27	1.767693e-23	7.070774e-25
26	8172876	7936614	NM_003750	EIF3A	0.828097	1.214939e-27	2.105125e-23	8.096634e-25
27	8172876	8008213	NM_007067	MYST2	0.826942	1.662617e-27	2.880816e-23	1.066969e-24
28	8172876	7952557	NM_003139	SRPR	0.823708	3.952859e-27	6.849119e-23	2.446114e-24
29	8172876	8069910	NM_020706	SFRS15	0.823395	4.294344e-27	7.440810e-23	2.565796e-24
30	8172876	8136401	NM_015135	NUP205	0.822308	5.719427e-27	9.910050e-23	3.303350e-24
31	8172876	8066668	NM_020967	NCOA5	0.821710	6.690931e-27	1.159338e-22	3.739799e-24
32	8172876	8062492	NM_020336	RALGAPB	0.820454	9.284236e-27	1.608680e-22	5.027124e-24
33	8172876	8179504	NM_005104	BRD2	0.820405	9.403331e-27	1.629315e-22	4.937319e-24
34	8172876	7930956	NM_007190	SEC23IP	0.819093	1.320057e-26	2.287263e-22	6.727244e-24
35	8172876	7987840	NM_015289	VPS39	0.818191	1.664257e-26	2.883659e-22	8.239024e-24
36	8172876	7905700	NM_014847	UBAP2L	0.817491	1.990099e-26	3.448244e-22	9.578456e-24
37	8172876	7955019	NM_152641	ARID2	0.815771	3.079425e-26	5.335719e-22	1.442086e-23
38	8172876	7913300	NM_016287	HP1BP3	0.815539	3.265001e-26	5.657268e-22	1.488755e-23
39	8172876	7897890	NM_015378	VPS13D	0.815302	3.465106e-26	6.003990e-22	1.539485e-23
40	8172876	8043791	NM_001134225	INPP4A	0.814475	4.264615e-26	7.389299e-22	1.847325e-23
41	8172876	8110894	NM_017755	NSUN2	0.814272	4.487263e-26	7.775081e-22	1.896361e-23
42	8172876	8164607	NM_015033	FNBP1	0.813351	5.645270e-26	9.781560e-22	2.328943e-23
43	8172876	8131056	NM_017781	CYP2W1	-0.813143	5.945732e-26	1.030217e-21	2.395853e-23
44	8172876	7947991	NM_015231	NUP160	0.812801	6.471464e-26	1.121311e-21	2.548433e-23
45	8172876	8118580	NM_005104	BRD2	0.812577	6.841378e-26	1.185406e-21	2.634235e-23
46	8172876	8115691	NM_003062	SLIT3	-0.811841	8.205212e-26	1.421717e-21	3.090689e-23
47	8172876	7914791	NM_005066	SFPQ	0.811716	8.461090e-26	1.466053e-21	3.119262e-23
48	8172876	8005903	NM_003170	SUPT6H	0.811294	9.388480e-26	1.626742e-21	3.389046e-23
49	8172876	7939341	NM_000610	CD44	0.811057	9.949203e-26	1.723898e-21	3.518160e-23
50	8172876	8028407	NM_000540	RYR1	-0.810294	1.199432e-25	2.078256e-21	4.156512e-23

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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