[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15254	8024019	NM_002819	PTBP1		polypyrimidine tract binding protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 15254.
Getting list of p-values for id 15254.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.146 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8024019	8015460	NM_001096	ACLY	0.863552	2.139074e-32	3.706373e-28	3.706373e-28
2	8024019	7940372	NM_024092	TMEM109	0.832056	4.071599e-28	7.054859e-24	3.527430e-24
3	8024019	8076465	NM_032311	POLDIP3	0.831824	4.345410e-28	7.529292e-24	2.509764e-24
4	8024019	8172876	NM_006306	SMC1A	0.830637	6.044517e-28	1.047334e-23	2.618334e-24
5	8024019	8025697	NM_012218	ILF3	0.828616	1.054410e-27	1.826976e-23	3.653951e-24
6	8024019	8164883	NM_033161	SURF4	0.821913	6.344712e-27	1.099348e-22	1.832247e-23
7	8024019	8029029	NM_007040	HNRNPUL1	0.815480	3.313833e-26	5.741878e-22	8.202682e-23
8	8024019	8052925	NM_144582	TEX261	0.813331	5.673785e-26	9.830967e-22	1.228871e-22
9	8024019	8019250	NM_000918	P4HB	0.808498	1.855357e-25	3.214776e-21	3.571974e-22
10	8024019	7949496	NM_005507	CFL1	0.808017	2.083541e-25	3.610151e-21	3.610151e-22
11	8024019	8139433	NM_033054	MYO1G	0.800847	1.132002e-24	1.961420e-20	1.783109e-21
12	8024019	8074647	NM_058004	PI4KA	0.796815	2.845435e-24	4.930285e-20	4.108571e-21
13	8024019	7948696	NM_004739	MTA2	0.795098	4.186187e-24	7.253406e-20	5.579543e-21
14	8024019	7939767	NM_003682	MADD	0.793180	6.417042e-24	1.111881e-19	7.942006e-21
15	8024019	7997099	NM_012426	SF3B3	0.790978	1.041988e-23	1.805453e-19	1.203635e-20
16	8024019	8084439	NM_182917	EIF4G1	0.783479	5.204721e-23	9.018219e-19	5.636387e-20
17	8024019	8009164	NM_005828	DCAF7	0.780578	9.533500e-23	1.651869e-18	9.716879e-20
18	8024019	7956166	NM_015292	ESYT1	0.779638	1.157609e-22	2.005790e-18	1.114328e-19
19	8024019	8176026	NM_001456	FLNA	0.779355	1.226962e-22	2.125958e-18	1.118925e-19
20	8024019	7948744	NM_198335	GANAB	0.778599	1.433036e-22	2.483021e-18	1.241510e-19
21	8024019	8108558	NM_080670	SLC35A4	0.775632	2.620057e-22	4.539772e-18	2.161796e-19
22	8024019	8011141	NM_006445	PRPF8	0.775499	2.691333e-22	4.663273e-18	2.119670e-19
23	8024019	8029831	NM_005184	CALM3	0.774011	3.628252e-22	6.286672e-18	2.733336e-19
24	8024019	7948192	NM_003146	SSRP1	0.773986	3.647051e-22	6.319245e-18	2.633019e-19
25	8024019	8116096	NM_016222	DDX41	0.772802	4.618790e-22	8.002978e-18	3.201191e-19
26	8024019	8099340	NM_017491	WDR1	0.771433	6.057769e-22	1.049630e-17	4.037037e-19
27	8024019	7898328	NM_001114600	C1orf144	0.771346	6.163354e-22	1.067924e-17	3.955275e-19
28	8024019	7955908	NM_005337	NCKAP1L	0.767926	1.203601e-21	2.085479e-17	7.448139e-19
29	8024019	8087271	NM_017730	QRICH1	0.766959	1.451260e-21	2.514599e-17	8.671031e-19
30	8024019	8013696	NM_014680	KIAA0100	0.766160	1.692947e-21	2.933369e-17	9.777898e-19
31	8024019	8053909	NM_014014	SNRNP200	0.766062	1.725217e-21	2.989283e-17	9.642848e-19
32	8024019	7970287	NM_005561	LAMP1	0.765910	1.776384e-21	3.077940e-17	9.618564e-19
33	8024019	7952557	NM_003139	SRPR	0.765633	1.873486e-21	3.246189e-17	9.836936e-19
34	8024019	8037005	NM_000660	TGFB1	0.765406	1.956490e-21	3.390010e-17	9.970617e-19
35	8024019	8160914	NM_007126	VCP	0.765402	1.958107e-21	3.392813e-17	9.693751e-19
36	8024019	8016099	NM_004247	EFTUD2	0.763430	2.852148e-21	4.941917e-17	1.372755e-18
37	8024019	8029560	NM_001294	CLPTM1	0.763210	2.973420e-21	5.152045e-17	1.392444e-18
38	8024019	8030881	NM_014225	PPP2R1A	0.762391	3.472040e-21	6.016004e-17	1.583159e-18
39	8024019	7914834	NM_002794	PSMB2	0.761632	4.005574e-21	6.940459e-17	1.779605e-18
40	8024019	7914296	NM_001020658	PUM1	0.757305	8.962610e-21	1.552951e-16	3.882378e-18
41	8024019	8015655	NM_178126	FAM134C	0.757176	9.177217e-21	1.590136e-16	3.878382e-18
42	8024019	7899688	NM_012316	KPNA6	0.755200	1.318134e-20	2.283931e-16	5.437930e-18
43	8024019	8051075	NM_001521	GTF3C2	0.754827	1.410667e-20	2.444262e-16	5.684331e-18
44	8024019	8082408	NM_013336	SEC61A1	0.753857	1.682376e-20	2.915053e-16	6.625119e-18
45	8024019	8032418	NM_003938	AP3D1	0.753701	1.730775e-20	2.998914e-16	6.664254e-18
46	8024019	8019211	NM_017921	NPLOC4	0.749430	3.720167e-20	6.445934e-16	1.401290e-17
47	8024019	7990151	NM_182470	PKM2	0.748674	4.252993e-20	7.369161e-16	1.567907e-17
48	8024019	7898833	NM_001009999	KDM1A	0.747050	5.661005e-20	9.808823e-16	2.043505e-17
49	8024019	8032730	NM_001961	EEF2	0.746523	6.208677e-20	1.075777e-15	2.195464e-17
50	8024019	7950473	NM_004041	ARRB1	0.743939	9.732352e-20	1.686325e-15	3.372649e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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