[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15516	8139433	NM_033054	MYO1G		myosin IG

Fetching correlation data, please wait...
Getting list of correlations for id 15516.
Getting list of p-values for id 15516.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.156 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8139433	7994826	NM_002209	ITGAL	0.839946	4.223410e-29	7.317903e-25	7.317903e-25
2	8139433	8176026	NM_001456	FLNA	0.823482	4.196708e-27	7.271635e-23	3.635818e-23
3	8139433	8019250	NM_000918	P4HB	0.807582	2.313913e-25	4.009317e-21	1.336439e-21
4	8139433	8024019	NM_002819	PTBP1	0.800847	1.132002e-24	1.961420e-20	4.903550e-21
5	8139433	8015460	NM_001096	ACLY	0.799232	1.641487e-24	2.844204e-20	5.688408e-21
6	8139433	7904974	NR_003242	C1orf152	0.783967	4.697172e-23	8.138790e-19	1.356465e-19
7	8139433	8022531	NM_000271	NPC1	0.783389	5.304356e-23	9.190858e-19	1.312980e-19
8	8139433	7944152	NM_001558	IL10RA	0.782286	6.683484e-23	1.158047e-18	1.447559e-19
9	8139433	8164883	NM_033161	SURF4	0.779914	1.093522e-22	1.894746e-18	2.105274e-19
10	8139433	7976876	NM_001376	DYNC1H1	0.778533	1.452523e-22	2.516787e-18	2.516787e-19
11	8139433	8136849	NM_001143679	GSTK1	0.777715	1.716936e-22	2.974934e-18	2.704486e-19
12	8139433	8011759	NM_005022	PFN1	0.777088	1.950868e-22	3.380269e-18	2.816891e-19
13	8139433	8034420	NM_000528	MAN2B1	0.770103	7.870625e-22	1.363743e-17	1.049033e-18
14	8139433	8016099	NM_004247	EFTUD2	0.766213	1.675855e-21	2.903754e-17	2.074110e-18
15	8139433	8084439	NM_182917	EIF4G1	0.765560	1.899586e-21	3.291413e-17	2.194275e-18
16	8139433	8073192	NM_006003	UQCRFS1	0.765503	1.920464e-21	3.327588e-17	2.079743e-18
17	8139433	8007715	NM_021079	NMT1	0.764372	2.384367e-21	4.131392e-17	2.430231e-18
18	8139433	7898328	NM_001114600	C1orf144	0.763432	2.850845e-21	4.939659e-17	2.744255e-18
19	8139433	7995492	NM_001114	ADCY7	0.761144	4.390392e-21	7.607233e-17	4.003807e-18
20	8139433	7948696	NM_004739	MTA2	0.760619	4.844654e-21	8.394333e-17	4.197166e-18
21	8139433	7909967	NM_001748	CAPN2	0.760317	5.125873e-21	8.881601e-17	4.229334e-18
22	8139433	7940372	NM_024092	TMEM109	0.758048	7.814217e-21	1.353969e-16	6.154406e-18
23	8139433	7914563	NM_003680	YARS	0.753987	1.643349e-20	2.847430e-16	1.238013e-17
24	8139433	7998033	NM_014972	TCF25	0.752440	2.173067e-20	3.765274e-16	1.568864e-17
25	8139433	8013696	NM_014680	KIAA0100	0.752268	2.241354e-20	3.883594e-16	1.553438e-17
26	8139433	7949496	NM_005507	CFL1	0.752211	2.264222e-20	3.923217e-16	1.508930e-17
27	8139433	8072687	NM_006739	MCM5	0.749637	3.585862e-20	6.213223e-16	2.301194e-17
28	8139433	7913256	NM_005216	DDOST	0.747913	4.864635e-20	8.428954e-16	3.010341e-17
29	8139433	7933164	NM_004966	HNRNPF	0.746441	6.298424e-20	1.091328e-15	3.763200e-17
30	8139433	8164644	NM_033387	FAM78A	0.746019	6.780720e-20	1.174895e-15	3.916318e-17
31	8139433	8163383	NM_022486	SUSD1	0.744114	9.441562e-20	1.635939e-15	5.277224e-17
32	8139433	8160914	NM_007126	VCP	0.744044	9.556985e-20	1.655939e-15	5.174809e-17
33	8139433	7952557	NM_003139	SRPR	0.744018	9.600197e-20	1.663426e-15	5.040685e-17
34	8139433	8027621	NM_000175	GPI	0.743004	1.143467e-19	1.981285e-15	5.827309e-17
35	8139433	7955908	NM_005337	NCKAP1L	0.742174	1.318761e-19	2.285018e-15	6.528622e-17
36	8139433	8025697	NM_012218	ILF3	0.740810	1.665220e-19	2.885327e-15	8.014797e-17
37	8139433	8009164	NM_005828	DCAF7	0.740346	1.801922e-19	3.122190e-15	8.438353e-17
38	8139433	7994603	NM_001030288	SPN	0.739245	2.171956e-19	3.763347e-15	9.903546e-17
39	8139433	8138773	NM_022170	EIF4H	0.736904	3.220848e-19	5.580764e-15	1.430965e-16
40	8139433	7939767	NM_003682	MADD	0.736039	3.721495e-19	6.448234e-15	1.612059e-16
41	8139433	7948192	NM_003146	SSRP1	0.735723	3.922975e-19	6.797339e-15	1.657887e-16
42	8139433	8064522	NM_174856	IDH3B	0.734449	4.847283e-19	8.398888e-15	1.999735e-16
43	8139433	7936884	NM_014661	FAM53B	0.734247	5.011511e-19	8.683445e-15	2.019406e-16
44	8139433	8119648	NM_057161	KLHDC3	0.733450	5.717039e-19	9.905913e-15	2.251344e-16
45	8139433	7964466	NM_006400	DCTN2	0.733360	5.802604e-19	1.005417e-14	2.234261e-16
46	8139433	7950473	NM_004041	ARRB1	0.730906	8.674312e-19	1.502998e-14	3.267387e-16
47	8139433	8086344	NM_001337	CX3CR1	0.729996	1.005683e-18	1.742548e-14	3.707548e-16
48	8139433	8099340	NM_017491	WDR1	0.729989	1.006882e-18	1.744624e-14	3.634633e-16
49	8139433	7963614	NM_000889	ITGB7	0.729963	1.011181e-18	1.752074e-14	3.575660e-16
50	8139433	8133434	NM_022170	EIF4H	0.729525	1.085515e-18	1.880872e-14	3.761744e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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