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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 16939.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
16939 8011759 NM_005022 PFN1 link to infopage profilin 1

Fetching correlation data, please wait...
Getting list of correlations for id 16939.
Getting list of p-values for id 16939.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.247 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8011759 7904974 NR_003242 C1orf152 link to infopage 0.889194 9.283737e-37 1.608593e-32 1.608593e-32
2 8011759 7965480 NM_002629 PGAM1 link to infopage 0.842472 1.992271e-29 3.452007e-25 1.726004e-25
3 8011759 7929624 NM_002629 PGAM1 link to infopage 0.829863 7.487775e-28 1.297407e-23 4.324689e-24
4 8011759 8173729 NM_001029891 PGAM4 link to infopage 0.826953 1.657574e-27 2.872079e-23 7.180197e-24
5 8011759 8176282 NM_001029891 PGAM4 link to infopage 0.826953 1.657574e-27 2.872079e-23 5.744157e-24
6 8011759 7958152 NM_002629 PGAM1 link to infopage 0.825426 2.501112e-27 4.333676e-23 7.222794e-24
7 8011759 8019250 NM_000918 P4HB link to infopage 0.816761 2.396339e-26 4.152137e-22 5.931625e-23
8 8011759 8004030 NM_015528 RNF167 link to infopage 0.788679 1.718164e-23 2.977063e-19 3.721329e-20
9 8011759 8132592 NM_002541 OGDH link to infopage 0.786052 3.019272e-23 5.231492e-19 5.812769e-20
10 8011759 7945275 NM_052875 VPS26B link to infopage 0.782173 6.842600e-23 1.185617e-18 1.185617e-19
11 8011759 7989619 NM_000942 PPIB link to infopage 0.780458 9.773059e-23 1.693378e-18 1.539435e-19
12 8011759 7920515 NM_017582 UBE2Q1 link to infopage 0.778705 1.402265e-22 2.429705e-18 2.024754e-19
13 8011759 8139433 NM_033054 MYO1G link to infopage 0.777088 1.950868e-22 3.380269e-18 2.600207e-19
14 8011759 8117760 NM_001098479 HLA-F link to infopage 0.776730 2.098096e-22 3.635371e-18 2.596694e-19
15 8011759 8116020 NM_006816 LMAN2 link to infopage 0.775524 2.677790e-22 4.639807e-18 3.093204e-19
16 8011759 7990151 NM_182470 PKM2 link to infopage 0.775028 2.958769e-22 5.126659e-18 3.204162e-19
17 8011759 7970287 NM_005561 LAMP1 link to infopage 0.775026 2.960015e-22 5.128818e-18 3.016952e-19
18 8011759 8179019 NM_018950 HLA-F link to infopage 0.772405 4.996982e-22 8.658271e-18 4.810151e-19
19 8011759 8064502 NM_003091 SNRPB link to infopage 0.772122 5.286172e-22 9.159350e-18 4.820711e-19
20 8011759 8099340 NM_017491 WDR1 link to infopage 0.771698 5.748850e-22 9.961032e-18 4.980516e-19
21 8011759 7949264 NM_006795 EHD1 link to infopage 0.768337 1.111260e-21 1.925480e-17 9.168950e-19
22 8011759 8177717 NM_018950 HLA-F link to infopage 0.765140 2.058897e-21 3.567451e-17 1.621569e-18
23 8011759 8075924 NM_002405 MFNG link to infopage 0.762340 3.505783e-21 6.074470e-17 2.641074e-18
24 8011759 7949496 NM_005507 CFL1 link to infopage 0.761807 3.875770e-21 6.715546e-17 2.798144e-18
25 8011759 7978208 NM_012461 TINF2 link to infopage 0.761172 4.367002e-21 7.566705e-17 3.026682e-18
26 8011759 8110803 NM_030782 CLPTM1L link to infopage 0.760227 5.212646e-21 9.031952e-17 3.473828e-18
27 8011759 8025741 NM_001005360 DNM2 link to infopage 0.756440 1.050689e-20 1.820528e-16 6.742698e-18
28 8011759 8171111 NM_001636 SLC25A6 link to infopage 0.756144 1.109355e-20 1.922179e-16 6.864923e-18
29 8011759 8177003 NM_001636 SLC25A6 link to infopage 0.756144 1.109355e-20 1.922179e-16 6.628202e-18
30 8011759 8134552 NM_005720 ARPC1B link to infopage 0.755899 1.160089e-20 2.010087e-16 6.700289e-18
31 8011759 8019762 link to infopage 0.750863 2.882972e-20 4.995326e-16 1.611395e-17
32 8011759 8053890 NM_020151 STARD7 link to infopage 0.746069 6.721660e-20 1.164662e-15 3.639569e-17
33 8011759 7941797 NM_001619 ADRBK1 link to infopage 0.743166 1.112115e-19 1.926963e-15 5.839280e-17
34 8011759 8030049 NM_017457 CYTH2 link to infopage 0.741387 1.509088e-19 2.614797e-15 7.690580e-17
35 8011759 7948696 NM_004739 MTA2 link to infopage 0.741346 1.519609e-19 2.633027e-15 7.522933e-17
36 8011759 7937802 NM_004356 CD81 link to infopage 0.740547 1.741515e-19 3.017523e-15 8.382007e-17
37 8011759 7913256 NM_005216 DDOST link to infopage 0.739937 1.931618e-19 3.346915e-15 9.045717e-17
38 8011759 8176026 NM_001456 FLNA link to infopage 0.738317 2.540291e-19 4.401563e-15 1.158306e-16
39 8011759 7964466 NM_006400 DCTN2 link to infopage 0.737457 2.935990e-19 5.087190e-15 1.304408e-16
40 8011759 8030007 NM_001425 EMP3 link to infopage 0.735957 3.772831e-19 6.537185e-15 1.634296e-16
41 8011759 7948192 NM_003146 SSRP1 link to infopage 0.735483 4.082937e-19 7.074505e-15 1.725489e-16
42 8011759 7995492 NM_001114 ADCY7 link to infopage 0.732885 6.274077e-19 1.087109e-14 2.588356e-16
43 8011759 8160914 NM_007126 VCP link to infopage 0.731573 7.779142e-19 1.347892e-14 3.134632e-16
44 8011759 8009685 NM_004252 SLC9A3R1 link to infopage 0.731507 7.864129e-19 1.362618e-14 3.096858e-16
45 8011759 8019772 NM_005782 THOC4 link to infopage 0.731438 7.952286e-19 1.377893e-14 3.061984e-16
46 8011759 7911619 NM_002074 GNB1 link to infopage 0.731250 8.201114e-19 1.421007e-14 3.089146e-16
47 8011759 8164883 NM_033161 SURF4 link to infopage 0.730503 9.262152e-19 1.604853e-14 3.414581e-16
48 8011759 8032137 NM_001033026 C19orf6 link to infopage 0.728450 1.291487e-18 2.237759e-14 4.661998e-16
49 8011759 8013696 NM_014680 KIAA0100 link to infopage 0.727142 1.593526e-18 2.761103e-14 5.634905e-16
50 8011759 8110841 NM_024830 LPCAT1 link to infopage 0.726765 1.692854e-18 2.933209e-14 5.866418e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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