[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
11500	7945275	NM_052875	VPS26B		vacuolar protein sorting 26 homolog B (S. pombe)

Fetching correlation data, please wait...
Getting list of correlations for id 11500.
Getting list of p-values for id 11500.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.164 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7945275	8150112	NM_000637	GSR	0.789290	1.505269e-23	2.608180e-19	2.608180e-19
2	7945275	8011759	NM_005022	PFN1	0.782173	6.842600e-23	1.185617e-18	5.928087e-19
3	7945275	8099340	NM_017491	WDR1	0.771055	6.526534e-22	1.130852e-17	3.769508e-18
4	7945275	8003773	NM_015085	RAP1GAP2	0.756552	1.029331e-20	1.783522e-16	4.458805e-17
5	7945275	8013696	NM_014680	KIAA0100	0.751708	2.478351e-20	4.294239e-16	8.588479e-17
6	7945275	8110803	NM_030782	CLPTM1L	0.750141	3.278736e-20	5.681065e-16	9.468442e-17
7	7945275	8138773	NM_022170	EIF4H	0.725824	1.967135e-18	3.408454e-14	4.869220e-15
8	7945275	8132592	NM_002541	OGDH	0.725824	1.967138e-18	3.408459e-14	4.260574e-15
9	7945275	8053890	NM_020151	STARD7	0.725626	2.030112e-18	3.517576e-14	3.908417e-15
10	7945275	7941797	NM_001619	ADRBK1	0.725357	2.119049e-18	3.671677e-14	3.671677e-15
11	7945275	8133434	NM_022170	EIF4H	0.725081	2.213843e-18	3.835926e-14	3.487205e-15
12	7945275	8068974	NM_003274	TRAPPC10	0.724976	2.251103e-18	3.900486e-14	3.250405e-15
13	7945275	8164883	NM_033161	SURF4	0.722747	3.201138e-18	5.546612e-14	4.266625e-15
14	7945275	7936884	NM_014661	FAM53B	0.718477	6.225090e-18	1.078621e-13	7.704439e-15
15	7945275	8019250	NM_000918	P4HB	0.718097	6.600517e-18	1.143672e-13	7.624478e-15
16	7945275	8160914	NM_007126	VCP	0.717524	7.209083e-18	1.249118e-13	7.806986e-15
17	7945275	8139433	NM_033054	MYO1G	0.717517	7.216533e-18	1.250409e-13	7.355345e-15
18	7945275	8082478	NM_016128	COPG	0.714712	1.107673e-17	1.919265e-13	1.066258e-14
19	7945275	8163383	NM_022486	SUSD1	0.712315	1.590894e-17	2.756542e-13	1.450812e-14
20	7945275	7904974	NR_003242	C1orf152	0.711426	1.818002e-17	3.150052e-13	1.575026e-14
21	7945275	7994826	NM_002209	ITGAL	0.711223	1.873914e-17	3.246931e-13	1.546158e-14
22	7945275	7950473	NM_004041	ARRB1	0.710918	1.961328e-17	3.398392e-13	1.544724e-14
23	7945275	7990211	NM_000520	HEXA	0.710711	2.023140e-17	3.505494e-13	1.524128e-14
24	7945275	7981494	NM_001014432	AKT1	0.709634	2.374939e-17	4.115057e-13	1.714607e-14
25	7945275	8075924	NM_002405	MFNG	0.708753	2.706487e-17	4.689529e-13	1.875812e-14
26	7945275	7949264	NM_006795	EHD1	0.707808	3.112192e-17	5.392496e-13	2.074037e-14
27	7945275	7920515	NM_017582	UBE2Q1	0.707692	3.165829e-17	5.485431e-13	2.031641e-14
28	7945275	8052925	NM_144582	TEX261	0.703632	5.730414e-17	9.929089e-13	3.546103e-14
29	7945275	8009685	NM_004252	SLC9A3R1	0.702119	7.129867e-17	1.235392e-12	4.259973e-14
30	7945275	7970287	NM_005561	LAMP1	0.701907	7.350339e-17	1.273593e-12	4.245311e-14
31	7945275	7956088	NM_002868	RAB5B	0.698465	1.201897e-16	2.082527e-12	6.717828e-14
32	7945275	7915504	NM_022821	ELOVL1	0.698372	1.217924e-16	2.110297e-12	6.594678e-14
33	7945275	8032137	NM_001033026	C19orf6	0.698102	1.265392e-16	2.192545e-12	6.644074e-14
34	7945275	8015655	NM_178126	FAM134C	0.698068	1.271589e-16	2.203283e-12	6.480243e-14
35	7945275	8110841	NM_024830	LPCAT1	0.697739	1.332055e-16	2.308052e-12	6.594433e-14
36	7945275	7995492	NM_001114	ADCY7	0.697598	1.358948e-16	2.354649e-12	6.540692e-14
37	7945275	8176026	NM_001456	FLNA	0.696979	1.482952e-16	2.569510e-12	6.944622e-14
38	7945275	8132580	NM_006555	YKT6	0.694549	2.085391e-16	3.613357e-12	9.508834e-14
39	7945275	7978208	NM_012461	TINF2	0.693721	2.340565e-16	4.055496e-12	1.039871e-13
40	7945275	7965480	NM_002629	PGAM1	0.692602	2.733962e-16	4.737135e-12	1.184284e-13
41	7945275	8004030	NM_015528	RNF167	0.692572	2.745330e-16	4.756832e-12	1.160203e-13
42	7945275	8027621	NM_000175	GPI	0.692436	2.797653e-16	4.847494e-12	1.154165e-13
43	7945275	7949496	NM_005507	CFL1	0.691872	3.024234e-16	5.240091e-12	1.218626e-13
44	7945275	7911619	NM_002074	GNB1	0.691248	3.295990e-16	5.710962e-12	1.297946e-13
45	7945275	8006820	NM_006148	LASP1	0.691204	3.316343e-16	5.746228e-12	1.276940e-13
46	7945275	8115783	NM_005990	STK10	0.690551	3.627683e-16	6.285686e-12	1.366453e-13
47	7945275	8064336	NM_144628	TBC1D20	0.689707	4.072676e-16	7.056725e-12	1.501431e-13
48	7945275	8073192	NM_006003	UQCRFS1	0.689135	4.404287e-16	7.631307e-12	1.589856e-13
49	7945275	8034420	NM_000528	MAN2B1	0.688254	4.966129e-16	8.604811e-12	1.756084e-13
50	7945275	7989619	NM_000942	PPIB	0.687661	5.382983e-16	9.327095e-12	1.865419e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
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