[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 12910.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12910	8132580	NM_006555	YKT6		YKT6 v-SNARE homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 12910.
Getting list of p-values for id 12910.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.095 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8132580	7915758	NM_021639	GPBP1L1	0.849746	2.120414e-30	3.674042e-26	3.674042e-26
2	8132580	7923659	NM_032833	PPP1R15B	0.845925	6.977937e-30	1.209067e-25	6.045336e-26
3	8132580	8140828	NM_003130	SRI	0.839315	5.085640e-29	8.811888e-25	2.937296e-25
4	8132580	8099340	NM_017491	WDR1	0.834069	2.310186e-28	4.002860e-24	1.000715e-24
5	8132580	8133434	NM_022170	EIF4H	0.833228	2.930283e-28	5.077302e-24	1.015460e-24
6	8132580	8138773	NM_022170	EIF4H	0.831484	4.776470e-28	8.276190e-24	1.379365e-24
7	8132580	8160914	NM_007126	VCP	0.830122	6.970136e-28	1.207715e-23	1.725308e-24
8	8132580	8090546	NM_001127192	CNBP	0.829672	7.891606e-28	1.367379e-23	1.709223e-24
9	8132580	8116622	NM_003804	RIPK1	0.829361	8.597564e-28	1.489700e-23	1.655222e-24
10	8132580	8104449	NM_012073	CCT5	0.823196	4.526889e-27	7.843741e-23	7.843741e-24
11	8132580	8073192	NM_006003	UQCRFS1	0.822669	5.201533e-27	9.012696e-23	8.193360e-24
12	8132580	7978208	NM_012461	TINF2	0.822242	5.819711e-27	1.008381e-22	8.403178e-24
13	8132580	7920492	NM_001098616	C1orf43	0.820144	1.006265e-26	1.743555e-22	1.341196e-23
14	8132580	7980463	NM_012245	SNW1	0.820077	1.023909e-26	1.774127e-22	1.267233e-23
15	8132580	7990211	NM_000520	HEXA	0.817270	2.105369e-26	3.647973e-22	2.431982e-23
16	8132580	8115168	NM_018047	RBM22	0.816845	2.346148e-26	4.065170e-22	2.540731e-23
17	8132580	7911619	NM_002074	GNB1	0.816426	2.608935e-26	4.520502e-22	2.659119e-23
18	8132580	7975976	NM_012111	AHSA1	0.815477	3.316365e-26	5.746266e-22	3.192370e-23
19	8132580	8006690	NM_012138	AATF	0.812177	7.553403e-26	1.308778e-21	6.888306e-23
20	8132580	7959282	NM_194271	RNF34	0.810722	1.080211e-25	1.871682e-21	9.358408e-23
21	8132580	7962935	NM_212461	PRKAG1	0.808819	1.716791e-25	2.974684e-21	1.416516e-22
22	8132580	7984155	NM_003099	SNX1	0.808380	1.908789e-25	3.307359e-21	1.503345e-22
23	8132580	7933164	NM_004966	HNRNPF	0.807587	2.310988e-25	4.004248e-21	1.740977e-22
24	8132580	8095048	NM_030917	FIP1L1	0.807358	2.441660e-25	4.230663e-21	1.762776e-22
25	8132580	8006392	NM_002815	PSMD11	0.807132	2.577653e-25	4.466299e-21	1.786520e-22
26	8132580	7944285	NM_001655	ARCN1	0.806530	2.977223e-25	5.158634e-21	1.984090e-22
27	8132580	8077781	NM_000551	VHL	0.804154	5.230902e-25	9.063583e-21	3.356883e-22
28	8132580	8130952	NM_002793	PSMB1	0.804063	5.344862e-25	9.261042e-21	3.307515e-22
29	8132580	7918345	NM_002790	PSMA5	0.803106	6.691516e-25	1.159439e-20	3.998066e-22
30	8132580	8080773	NM_001098783	RPP14	0.802854	7.098540e-25	1.229964e-20	4.099880e-22
31	8132580	7977657	NM_031314	HNRNPC	0.802716	7.329810e-25	1.270036e-20	4.096891e-22
32	8132580	7934367	NM_004034	ANXA7	0.802489	7.730062e-25	1.339388e-20	4.185587e-22
33	8132580	8090490	NM_002950	RPN1	0.801290	1.021519e-24	1.769987e-20	5.363596e-22
34	8132580	8009932	NM_013260	SAP30BP	0.800196	1.315405e-24	2.279203e-20	6.703539e-22
35	8132580	8050908	NM_000182	HADHA	0.799343	1.600251e-24	2.772756e-20	7.922159e-22
36	8132580	8020241	NM_020232	PSMG2	0.798009	2.170419e-24	3.760685e-20	1.044635e-21
37	8132580	8091048	NR_023350	COPB2	0.797742	2.306237e-24	3.996017e-20	1.080005e-21
38	8132580	8163784	NM_012164	FBXW2	0.797343	2.524813e-24	4.374744e-20	1.151248e-21
39	8132580	7975747	NM_001933	DLST	0.797283	2.559141e-24	4.434223e-20	1.136980e-21
40	8132580	8072206	NM_005243	EWSR1	0.797240	2.584231e-24	4.477698e-20	1.119424e-21
41	8132580	8139706	NM_014302	SEC61G	0.796092	3.349310e-24	5.803349e-20	1.415451e-21
42	8132580	7931728	NM_015155	LARP4B	0.795986	3.430077e-24	5.943294e-20	1.415070e-21
43	8132580	8168500	NM_000291	PGK1	0.795916	3.484179e-24	6.037038e-20	1.403962e-21
44	8132580	7944850	NM_032811	TBRG1	0.794674	4.602416e-24	7.974605e-20	1.812410e-21
45	8132580	7987840	NM_015289	VPS39	0.791874	8.560080e-24	1.483205e-19	3.296011e-21
46	8132580	8003758	NM_000430	PAFAH1B1	0.791740	8.817861e-24	1.527871e-19	3.321458e-21
47	8132580	7944375	NM_016146	TRAPPC4	0.790158	1.246297e-23	2.159459e-19	4.594593e-21
48	8132580	8042720	NM_006429	CCT7	0.789132	1.557749e-23	2.699111e-19	5.623148e-21
49	8132580	8093112	NM_015562	UBXN7	0.788961	1.616437e-23	2.800800e-19	5.715918e-21
50	8132580	7967149	NM_016237	ANAPC5	0.787996	1.990935e-23	3.449693e-19	6.899386e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation