[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
10522	8009932	NM_013260	SAP30BP		SAP30 binding protein

Fetching correlation data, please wait...
Getting list of correlations for id 10522.
Getting list of p-values for id 10522.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.144 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8009932	8099340	NM_017491	WDR1	0.836767	1.067812e-28	1.850197e-24	1.850197e-24
2	8009932	8160914	NM_007126	VCP	0.834227	2.209016e-28	3.827563e-24	1.913781e-24
3	8009932	8006392	NM_002815	PSMD11	0.818398	1.578098e-26	2.734370e-22	9.114566e-23
4	8009932	7990211	NM_000520	HEXA	0.810493	1.142310e-25	1.979281e-21	4.948201e-22
5	8009932	7906703	NM_004550	NDUFS2	0.801840	8.991042e-25	1.557878e-20	3.115756e-21
6	8009932	8132580	NM_006555	YKT6	0.800196	1.315405e-24	2.279203e-20	3.798672e-21
7	8009932	8073192	NM_006003	UQCRFS1	0.800158	1.326882e-24	2.299088e-20	3.284411e-21
8	8009932	7913169	NM_004930	CAPZB	0.798310	2.026276e-24	3.510929e-20	4.388661e-21
9	8009932	8050908	NM_000182	HADHA	0.797689	2.334027e-24	4.044169e-20	4.493521e-21
10	8009932	8163784	NM_012164	FBXW2	0.795997	3.421459e-24	5.928362e-20	5.928362e-21
11	8009932	7975976	NM_012111	AHSA1	0.792299	7.796248e-24	1.350856e-19	1.228051e-20
12	8009932	8090490	NM_002950	RPN1	0.791251	9.816155e-24	1.700845e-19	1.417371e-20
13	8009932	8119648	NM_057161	KLHDC3	0.791007	1.035428e-23	1.794086e-19	1.380066e-20
14	8009932	7978208	NM_012461	TINF2	0.789040	1.589126e-23	2.753478e-19	1.966770e-20
15	8009932	7962869	NM_004818	DDX23	0.788734	1.697937e-23	2.942015e-19	1.961343e-20
16	8009932	8082478	NM_016128	COPG	0.787690	2.126297e-23	3.684234e-19	2.302646e-20
17	8009932	8116020	NM_006816	LMAN2	0.785711	3.246711e-23	5.625576e-19	3.309162e-20
18	8009932	8117888	NM_006325	RAN	0.783256	5.454977e-23	9.451838e-19	5.251021e-20
19	8009932	8004030	NM_015528	RNF167	0.780088	1.054996e-22	1.827991e-18	9.621006e-20
20	8009932	7963935	NM_032364	DNAJC14	0.778450	1.477559e-22	2.560167e-18	1.280083e-19
21	8009932	7958414	NM_014301	ISCU	0.777605	1.756005e-22	3.042629e-18	1.448871e-19
22	8009932	8019046	NM_014740	EIF4A3	0.776114	2.376838e-22	4.118347e-18	1.871976e-19
23	8009932	7940051	NM_015457	ZDHHC5	0.774544	3.261260e-22	5.650786e-18	2.456863e-19
24	8009932	7921752	NM_001025598	ARHGAP30	0.774363	3.381469e-22	5.859072e-18	2.441280e-19
25	8009932	7941709	NM_002896	RBM4	0.774065	3.589886e-22	6.220196e-18	2.488079e-19
26	8009932	7920515	NM_017582	UBE2Q1	0.773766	3.810976e-22	6.603278e-18	2.539722e-19
27	8009932	7999233	NM_032569	GLYR1	0.773511	4.010137e-22	6.948365e-18	2.573468e-19
28	8009932	7964466	NM_006400	DCTN2	0.772763	4.654333e-22	8.064563e-18	2.880201e-19
29	8009932	7918345	NM_002790	PSMA5	0.772542	4.862982e-22	8.426089e-18	2.905548e-19
30	8009932	8089911	NM_005335	HCLS1	0.772368	5.034109e-22	8.722601e-18	2.907534e-19
31	8009932	8061186	NM_006363	SEC23B	0.771881	5.544211e-22	9.606455e-18	3.098857e-19
32	8009932	8018315	NM_006937	SUMO2	0.771413	6.082244e-22	1.053870e-17	3.293345e-19
33	8009932	7987172	NM_020154	C15orf24	0.771293	6.228118e-22	1.079146e-17	3.270139e-19
34	8009932	8173729	NM_001029891	PGAM4	0.770795	6.869736e-22	1.190319e-17	3.500939e-19
35	8009932	8176282	NM_001029891	PGAM4	0.770795	6.869736e-22	1.190319e-17	3.400912e-19
36	8009932	7960594	NM_001273	CHD4	0.770722	6.968712e-22	1.207469e-17	3.354080e-19
37	8009932	8042720	NM_006429	CCT7	0.768387	1.100390e-21	1.906645e-17	5.153096e-19
38	8009932	7958152	NM_002629	PGAM1	0.767263	1.368668e-21	2.371490e-17	6.240764e-19
39	8009932	8133434	NM_022170	EIF4H	0.766961	1.450847e-21	2.513882e-17	6.445851e-19
40	8009932	8164067	NM_002799	PSMB7	0.766735	1.515481e-21	2.625875e-17	6.564687e-19
41	8009932	8164177	NM_001006617	MAPKAP1	0.765741	1.834774e-21	3.179113e-17	7.753934e-19
42	8009932	7900576	NM_006347	PPIH	0.765400	1.958947e-21	3.394267e-17	8.081589e-19
43	8009932	7936028	NM_005736	ACTR1A	0.764425	2.360352e-21	4.089782e-17	9.511122e-19
44	8009932	8077550	NM_001077525	MTMR14	0.763825	2.645800e-21	4.584377e-17	1.041904e-18
45	8009932	8061815	NM_182658	C20orf185	-0.763511	2.808364e-21	4.866053e-17	1.081345e-18
46	8009932	7978201	NM_006156	NEDD8	0.763012	3.087026e-21	5.348889e-17	1.162802e-18
47	8009932	8164883	NM_033161	SURF4	0.762861	3.176772e-21	5.504394e-17	1.171148e-18
48	8009932	8134699	NM_006833	COPS6	0.762643	3.310636e-21	5.736338e-17	1.195070e-18
49	8009932	7980463	NM_012245	SNW1	0.762011	3.730188e-21	6.463297e-17	1.319040e-18
50	8009932	8081135	NM_001134422	CDV3	0.761558	4.062035e-21	7.038288e-17	1.407658e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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