[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
13670	8164067	NM_002799	PSMB7		proteasome (prosome, macropain) subunit, beta type, 7

Fetching correlation data, please wait...
Getting list of correlations for id 13670.
Getting list of p-values for id 13670.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.148 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8164067	8001185	NM_005880	DNAJA2	0.869012	3.017139e-33	5.227796e-29	5.227796e-29
2	8164067	8080923	NM_002802	PSMC1	0.861063	5.080141e-32	8.802360e-28	4.401180e-28
3	8164067	7976189	NM_002802	PSMC1	0.859761	7.933982e-32	1.374721e-27	4.582404e-28
4	8164067	7978201	NM_006156	NEDD8	0.846527	5.796383e-30	1.004339e-25	2.510848e-26
5	8164067	7975645	NM_021188	ZNF410	0.842376	2.050308e-29	3.552569e-25	7.105137e-26
6	8164067	7950644	NM_004549	NDUFC2	0.839191	5.273756e-29	9.137836e-25	1.522973e-25
7	8164067	7977657	NM_031314	HNRNPC	0.837859	7.782456e-29	1.348466e-24	1.926380e-25
8	8164067	8139706	NM_014302	SEC61G	0.837482	8.682676e-29	1.504447e-24	1.880559e-25
9	8164067	8146216	NM_001135694	VDAC3	0.837184	9.466059e-29	1.640184e-24	1.822427e-25
10	8164067	8130952	NM_002793	PSMB1	0.835875	1.380138e-28	2.391365e-24	2.391365e-25
11	8164067	7928752	NM_014394	GHITM	0.835695	1.453463e-28	2.518415e-24	2.289468e-25
12	8164067	7916372	NM_004872	TMEM59	0.831688	4.513417e-28	7.820398e-24	6.516998e-25
13	8164067	7971550	NM_014166	MED4	0.831377	4.921838e-28	8.528069e-24	6.560053e-25
14	8164067	7906662	NM_016406	UFC1	0.830647	6.027933e-28	1.044460e-23	7.460428e-25
15	8164067	7980463	NM_012245	SNW1	0.828756	1.014753e-27	1.758263e-23	1.172176e-24
16	8164067	8094704	NM_005339	UBE2K	0.827980	1.254318e-27	2.173356e-23	1.358348e-24
17	8164067	7959597	NM_006815	TMED2	0.826604	1.821575e-27	3.156243e-23	1.856613e-24
18	8164067	8042259	NM_005917	MDH1	0.826132	2.068877e-27	3.584744e-23	1.991524e-24
19	8164067	7980833	NM_032560	SMEK1	0.823485	4.193759e-27	7.266526e-23	3.824487e-24
20	8164067	7906703	NM_004550	NDUFS2	0.822158	5.949372e-27	1.030848e-22	5.154238e-24
21	8164067	8090546	NM_001127192	CNBP	0.817349	2.063487e-26	3.575403e-22	1.702573e-23
22	8164067	8053763	NM_031902	MRPS5	0.816493	2.565259e-26	4.444824e-22	2.020375e-23
23	8164067	7967304	NM_198261	RSRC2	0.815811	3.047966e-26	5.281212e-22	2.296179e-23
24	8164067	8028514	NM_013234	EIF3K	0.815664	3.163125e-26	5.480746e-22	2.283644e-23
25	8164067	8163784	NM_012164	FBXW2	0.812488	6.993552e-26	1.211773e-21	4.847091e-23
26	8164067	7915758	NM_021639	GPBP1L1	0.812049	7.794510e-26	1.350555e-21	5.194441e-23
27	8164067	8047059	NM_031314	HNRNPC	0.811074	9.909258e-26	1.716977e-21	6.359175e-23
28	8164067	8108015	NM_002154	HSPA4	0.810602	1.112242e-25	1.927182e-21	6.882792e-23
29	8164067	8135235	NM_004279	PMPCB	0.809264	1.541214e-25	2.670462e-21	9.208490e-23
30	8164067	8101945	NM_002106	H2AFZ	0.808875	1.693680e-25	2.934639e-21	9.782128e-23
31	8164067	8014081	NM_018428	UTP6	0.808658	1.784752e-25	3.092440e-21	9.975612e-23
32	8164067	8132943	NM_001762	CCT6A	0.807919	2.133456e-25	3.696640e-21	1.155200e-22
33	8164067	7918345	NM_002790	PSMA5	0.806397	3.072910e-25	5.324431e-21	1.613464e-22
34	8164067	8140828	NM_003130	SRI	0.805528	3.779344e-25	6.548470e-21	1.926021e-22
35	8164067	7940688	NM_002696	POLR2G	0.805048	4.235696e-25	7.339191e-21	2.096912e-22
36	8164067	8136631	NM_003143	SSBP1	0.803393	6.256613e-25	1.084083e-20	3.011342e-22
37	8164067	8092564	NM_004593	TRA2B	0.803363	6.300748e-25	1.091731e-20	2.950623e-22
38	8164067	8108424	NM_001033112	PAIP2	0.802011	8.641132e-25	1.497249e-20	3.940129e-22
39	8164067	8018315	NM_006937	SUMO2	0.801961	8.742119e-25	1.514747e-20	3.883967e-22
40	8164067	8006392	NM_002815	PSMD11	0.801654	9.388984e-25	1.626829e-20	4.067073e-22
41	8164067	8093156	NM_007362	NCBP2	0.800255	1.297663e-24	2.248461e-20	5.484050e-22
42	8164067	7897404	NM_007262	PARK7	0.800247	1.300024e-24	2.252552e-20	5.363219e-22
43	8164067	8049180	NM_004846	EIF4E2	0.799992	1.378787e-24	2.389024e-20	5.555870e-22
44	8164067	8148703	NM_198572	SPATC1	-0.799991	1.378894e-24	2.389210e-20	5.430022e-22
45	8164067	8141133	NM_006304	SHFM1	0.799828	1.431739e-24	2.480775e-20	5.512833e-22
46	8164067	8048703	NM_032338	LLPH	0.799247	1.635821e-24	2.834387e-20	6.161710e-22
47	8164067	7989735	NM_006660	CLPX	0.798891	1.774934e-24	3.075428e-20	6.543464e-22
48	8164067	7978208	NM_012461	TINF2	0.798801	1.811693e-24	3.139120e-20	6.539833e-22
49	8164067	7941709	NM_002896	RBM4	0.798563	1.912745e-24	3.314212e-20	6.763699e-22
50	8164067	8088384	NM_000925	PDHB	0.798546	1.920452e-24	3.327567e-20	6.655134e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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