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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
14926 7928752 NM_014394 GHITM link to infopage growth hormone inducible transmembrane protein

Fetching correlation data, please wait...
Getting list of correlations for id 14926.
Getting list of p-values for id 14926.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.142 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7928752 7977657 NM_031314 HNRNPC link to infopage 0.904043 8.273262e-40 1.433508e-35 1.433508e-35
2 7928752 7916372 NM_004872 TMEM59 link to infopage 0.887235 2.174530e-36 3.767809e-32 1.883904e-32
3 7928752 8139706 NM_014302 SEC61G link to infopage 0.876850 1.546626e-34 2.679839e-30 8.932798e-31
4 7928752 8130952 NM_002793 PSMB1 link to infopage 0.875816 2.314530e-34 4.010386e-30 1.002596e-30
5 7928752 7976189 NM_002802 PSMC1 link to infopage 0.874784 3.449503e-34 5.976954e-30 1.195391e-30
6 7928752 8091048 NR_023350 COPB2 link to infopage 0.874306 4.144258e-34 7.180755e-30 1.196793e-30
7 7928752 8139421 NM_012412 H2AFV link to infopage 0.871081 1.403379e-33 2.431634e-29 3.473763e-30
8 7928752 8080923 NM_002802 PSMC1 link to infopage 0.870676 1.632012e-33 2.827787e-29 3.534733e-30
9 7928752 7964250 NM_006601 PTGES3 link to infopage 0.869676 2.363026e-33 4.094415e-29 4.549351e-30
10 7928752 8048234 NM_152862 ARPC2 link to infopage 0.867497 5.239525e-33 9.078525e-29 9.078525e-30
11 7928752 7942553 NM_014752 SPCS2 link to infopage 0.866868 6.578352e-33 1.139831e-28 1.036210e-29
12 7928752 8001185 NM_005880 DNAJA2 link to infopage 0.866296 8.079129e-33 1.399871e-28 1.166559e-29
13 7928752 7989735 NM_006660 CLPX link to infopage 0.865837 9.520818e-33 1.649672e-28 1.268979e-29
14 7928752 8146216 NM_001135694 VDAC3 link to infopage 0.864749 1.402394e-32 2.429928e-28 1.735663e-29
15 7928752 7913814 NM_015484 SYF2 link to infopage 0.862896 2.691020e-32 4.662730e-28 3.108487e-29
16 7928752 8094704 NM_005339 UBE2K link to infopage 0.861181 4.877396e-32 8.451064e-28 5.281915e-29
17 7928752 7947015 NM_006292 TSG101 link to infopage 0.859677 8.161996e-32 1.414229e-27 8.318994e-29
18 7928752 7974587 NM_018477 ACTR10 link to infopage 0.858885 1.067966e-31 1.850465e-27 1.028036e-28
19 7928752 8168500 NM_000291 PGK1 link to infopage 0.858205 1.343652e-31 2.328146e-27 1.225340e-28
20 7928752 8078738 NM_005109 OXSR1 link to infopage 0.857730 1.576213e-31 2.731105e-27 1.365552e-28
21 7928752 8003758 NM_000430 PAFAH1B1 link to infopage 0.851184 1.342942e-30 2.326915e-26 1.108055e-27
22 7928752 7980463 NM_012245 SNW1 link to infopage 0.850050 1.925775e-30 3.336790e-26 1.516723e-27
23 7928752 8140828 NM_003130 SRI link to infopage 0.848666 2.978632e-30 5.161076e-26 2.243946e-27
24 7928752 8110589 NM_015455 CNOT6 link to infopage 0.846222 6.368043e-30 1.103391e-25 4.597462e-27
25 7928752 7957177 NM_014999 RAB21 link to infopage 0.846203 6.405406e-30 1.109865e-25 4.439459e-27
26 7928752 7936871 NM_000274 OAT link to infopage 0.845459 8.050489e-30 1.394908e-25 5.365032e-27
27 7928752 7959282 NM_194271 RNF34 link to infopage 0.844683 1.020705e-29 1.768575e-25 6.550279e-27
28 7928752 7917455 NM_004261 SEP15 link to infopage 0.844631 1.036944e-29 1.796712e-25 6.416829e-27
29 7928752 7897404 NM_007262 PARK7 link to infopage 0.841964 2.319302e-29 4.018655e-25 1.385743e-26
30 7928752 8127637 NM_018247 TMEM30A link to infopage 0.841211 2.903550e-29 5.030980e-25 1.676993e-26
31 7928752 7968297 NM_015932 POMP link to infopage 0.838323 6.799680e-29 1.178181e-24 3.800583e-26
32 7928752 8147172 NM_003909 CPNE3 link to infopage 0.838093 7.270151e-29 1.259699e-24 3.936559e-26
33 7928752 7955890 NM_031157 HNRNPA1 link to infopage 0.836069 1.305562e-28 2.262147e-24 6.854991e-26
34 7928752 8020241 NM_020232 PSMG2 link to infopage 0.835714 1.445404e-28 2.504452e-24 7.366035e-26
35 7928752 8164067 NM_002799 PSMB7 link to infopage 0.835695 1.453463e-28 2.518415e-24 7.195472e-26
36 7928752 8055672 NM_015702 MMADHC link to infopage 0.834299 2.164107e-28 3.749749e-24 1.041597e-25
37 7928752 7959597 NM_006815 TMED2 link to infopage 0.833160 2.986908e-28 5.175415e-24 1.398761e-25
38 7928752 8170097 NM_001042537 SLC9A6 link to infopage 0.832756 3.346491e-28 5.798465e-24 1.525912e-25
39 7928752 7973902 NM_003136 SRP54 link to infopage 0.830593 6.119581e-28 1.060340e-23 2.718820e-25
40 7928752 7993872 NM_003366 UQCRC2 link to infopage 0.830552 6.188245e-28 1.072237e-23 2.680593e-25
41 7928752 8005512 NM_002767 PRPSAP2 link to infopage 0.830363 6.521174e-28 1.129924e-23 2.755912e-25
42 7928752 8018315 NM_006937 SUMO2 link to infopage 0.829807 7.602568e-28 1.317297e-23 3.136421e-25
43 7928752 8122705 NM_005389 PCMT1 link to infopage 0.829721 7.784923e-28 1.348894e-23 3.136962e-25
44 7928752 7978833 NM_001001 RPL36AL link to infopage 0.829681 7.872964e-28 1.364149e-23 3.100338e-25
45 7928752 7908543 NM_133494 NEK7 link to infopage 0.829649 7.940697e-28 1.375884e-23 3.057521e-25
46 7928752 8041273 NM_032312 YIPF4 link to infopage 0.829463 8.359621e-28 1.448472e-23 3.148851e-25
47 7928752 7975976 NM_012111 AHSA1 link to infopage 0.829349 8.623834e-28 1.494252e-23 3.179259e-25
48 7928752 7979473 NM_016029 DHRS7 link to infopage 0.828785 1.006876e-27 1.744614e-23 3.634613e-25
49 7928752 8109732 NM_013283 MAT2B link to infopage 0.828688 1.033982e-27 1.791580e-23 3.656286e-25
50 7928752 7932616 NM_005470 ABI1 link to infopage 0.828384 1.123521e-27 1.946725e-23 3.893451e-25

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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